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gtgcgtatttgaagtataattattcactgacttttgtactgatttatatgatattaactgtaacccatgcttttacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCATGCGCTGTTCTAG
species | Glycine max |
transcript | GLYMA09G08150.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGTCCAGATCATATGATGTTTGAG GTATGGAACCCACTAGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCAEST: gi|208083788|gb|GD881736.1|GD881736
genomic: ACGTCCAGATCATATGATGTTTGAGgtgcgtattt ... tacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCA
EST: ACGTCCAGATCATATGATGTTTGAG GTATGGAACCCACTAGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCAEST: gi|193367841|gb|FK333423.1|FK333423
genomic: ACGTCCAGATCATATGATGTTTGAGgtgcgtattt ... tacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCA
EST: ACGTCCAGATCATATGATGTTTGAG GTATGGAACCCACTAGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCAEST: gi|254327078|gb|GR836687.1|GR836687
genomic: ACGTCCAGATCATATGATGTTTGAGgtgcgtattt ... tacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCA
EST: ACGTCCAGATCATATGATGTTTGAG GTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCAEST: gi|208034630|gb|GD836794.1|GD836794
genomic: ACGTCCAGATCATATGATGTTTGAGgtgcgtattt ... tacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCA
EST: ACGTCCAGATCATATGATGTTTGAG GTATGGAACCCACTAGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCAEST: gi|193521194|gb|FK480305.1|FK480305
genomic: ACGTCCAGATCATATGATGTTTGAGgtgcgtattt ... tacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCA
EST: ACGTCCAGATCATATGATGTTTGAG GTATGGAACCCACTAGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCAEST: gi|254341577|gb|GR852714.1|GR852714
genomic: ACGTCCAGATCATATGATGTTTGAGgtgcgtattt ... tacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCA
EST: ACGTCCAGATCATATGATGTTTGAG GTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCAEST: gi|151408630|gb|EV278438.1|EV278438
genomic: ACGTCCAGATCATATGATGTTTGAGgtgcgtattt ... tacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCA
EST: ACGTCCAGATCATATGATGTTTGAG GTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCAEST: gi|12489527|gb|BG043049.1|BG043049
genomic: ACGTCCAGATCATATGATGTTTGAGgtgcgtattt ... tacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCA
EST: ACGTCCAGATCATATGATGTTTGAG GTATGGAACCCACTATGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCAEST: gi|6668020|gb|AW279471.1|AW279471
genomic: ACGTCCAGATCATATGATGTTTGAGgtgcgtattt ... tacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCA
EST: ACGTCCAGATCATATGATGTTTGAG GTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCAEST: gi|16347961|gb|BI973556.1|BI973556
genomic: ACGTCCAGATCATATGATGTTTGAGgtgcgtattt ... tacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCA
EST: ACGTCCAGATCATATGATGTTTGAG GTATGGAACCCACTATGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCAEST: gi|254331835|gb|GR846145.1|GR846145
genomic: ACGTCCAGATCATATGATGTTTGAGgtgcgtattt ... tacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCA
EST: ACGTCCAGATCATATGATGTTTGAG GTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCAEST: gi|193455585|gb|FK418764.1|FK418764
genomic: ACGTCCAGATCATATGATGTTTGAGgtgcgtattt ... tacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCA
EST: ACGTCCAGATCATATGATGTTTGAG GTATGGAACCCACTAGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCAEST: gi|27427065|gb|CA938585.1|CA938585
genomic: ACGTCCAGATCATATGATGTTTGAGgtgcgtattt ... tacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCA
EST: ACGTCCAGATCATATGATGTTTGAG GTATGGAACCCACTAGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCA
genomic: ACGTCCAGATCATATGATGTTTGAGgtgcgtattt ... tacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCA
gacttttgtactgatttatatgatattaactgtaacccatgcttttacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCATGCGCTGTTCTAG
tgctttt CT-rich tract
atttatatgatattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtatttgaagtataattattcactgacttttgtactgatttatatgatattaactgtaacccatgcttttacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCATGCGCTGTTCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT