1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aacaatacattcttttgctttcaaacaggcatgtaacaaataaataaaccaagttacataatgtttgcttatattttgacacatcgttccttgtatgaagAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAG
species | Glycine max |
transcript | GLYMA08G08330.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAG AATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCEST: gi|192318183|gb|FK007213.1|FK007213
genomic: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAGgtgaatagcc ... ttgtatgaagAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCC
EST: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAG AATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCEST: gi|31307986|gb|CD393189.1|CD393189
genomic: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAGgtgaatagcc ... ttgtatgaagAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCC
EST: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAG AATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCEST: gi|193372998|gb|FK333862.1|FK333862
genomic: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAGgtgaatagcc ... ttgtatgaagAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCC
EST: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAG AATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCEST: gi|192318154|gb|FK007212.1|FK007212
genomic: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAGgtgaatagcc ... ttgtatgaagAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCC
EST: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAG AATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCEST: gi|120531893|gb|EH260026.1|EH260026
genomic: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAGgtgaatagcc ... ttgtatgaagAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCC
EST: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAA-TATTCAG AATCATGGGTACACCAATTGAAGACACATGGCCTGGAGEST: gi|193600461|gb|FK554688.1|FK554688
genomic: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAGgtgaatagcc ... ttgtatgaagAATCATGGGTACACCAAATGAAGACACATGGCCTGGAG
EST: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAG AATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCEST: gi|18039329|gb|BM307623.1|BM307623
genomic: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAGgtgaatagcc ... ttgtatgaagAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCC
EST: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAG AATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCEST: gi|11411903|gb|BF423914.1|BF423914
genomic: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAGgtgaatagcc ... ttgtatgaagAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCC
EST: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAG AATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCEST: gi|18038935|gb|BM307229.1|BM307229
genomic: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAGgtgaatagcc ... ttgtatgaagAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCC
EST: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAG AATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCEST: gi|13790009|gb|BG652600.1|BG652600
genomic: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAGgtgaatagcc ... ttgtatgaagAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCC
EST: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAG AATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCEST: gi|22931456|gb|BU548595.1|BU548595
genomic: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAGgtgaatagcc ... ttgtatgaagAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCC
EST: ATTGTTTAAAATATTCNN NATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCEST: gi|11688056|gb|BF595732.1|BF595732
genomic: ATTGTTTAAAATATTCAGgtgaatagcc ... ttgtatgaagAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCC
EST: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAG AATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCC
genomic: CCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAGgtgaatagcc ... ttgtatgaagAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCC
aaaccaagttacataatgtttgcttatattttgacacatcgttccttgtatgaagAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAG
ttttgac putative branch site (score: 3)
tcgttcctt putative PPT
tttgcttatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaatacattcttttgctttcaaacaggcatgtaacaaataaataaaccaagttacataatgtttgcttatattttgacacatcgttccttgtatgaagAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAG
- caataca
- - - - - - - -tgctttc
- - - - - - - - - - - - - - gcatgta
- - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacaca