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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attaattttttccagctgtttgagttcatacacaatgcatgaaccttgaagatgtactcctatattttcctccctcacttgcatattttctattatgcagTTGTCATTGTTGCTTAAAGGGACAGTTGTTGCACCTCCTGATAAGTTTG

Basic information

species Glycine max
transcript GLYMA08G07990.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07990.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv12s0055g00490.t01 (Vitis vinifera), 3'ss of exon 7
---------attaattttttccagctgtttgagttcatacacaatgcatgaaccttgaagatgtactcctatattttcctccctcacttgcatattttctattatgcagTTGTCATTGTTGCTTAAAGGGACAGTTGTTGCACCTCCTGATAAGTTTG
          ||  | |||| || | || ||  || ||      | || ||   ||        |||||| | |        || |||   || |  | || ||  |||||||||||| | || ||||||||||||||||| ||||| || || ||||
tgttctctgttttttctttttcaacggtctggttttatgagggtttcaagactatt--------actcctgt-tgacttgttctgactaaaatttggtttactactcagTTGTCATTGCTACTGAAAGGGACAGTTGTTGCGCCTCCGGAAAAATTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaagatgtactcctatattttcctccctcacttgcatattttctattatgcagTTGTCATTGTTGCTTAAAGGGACAGTTGTTGCACCTCCTGATAAGTTTG
                          ccctcac  putative branch site (score: 3)
                   ttttcctccctcactt  CT-rich tract
                                     atattttctattat  TA-rich tract