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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtccatattttgagtcatatttgtatggacaattcacaccttagattccattttttttatttccttctcaaaaagatgttttgatttttttttaaacagGTAAAACAGAAAACACTGATAATATGGGGTGAAAACGACCGCATCATCAGCAATAAGTTTGCAGTGGTTAGTTACTTTGTGACACTTTTTATAACATGTT

Basic information

species Glycine max
transcript GLYMA07G24950.4
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254347326|gb|GR853575.1|GR853575
EST:     TGAGATGTTGTATTGTGTAATTCCGTGGAGAATCCAAGAATAATAATAAT                         GTAAAACAGAAAACACTGATAATATGGGGTGAAAACGACCGCATCATCAGC
genomic: TGAGATGTTGTATTGTGTAATTCCGTGGAGAATCCAAGAATAATAATAATgtaaataact ... ttttaaacagGTAAAACAGAAAACACTGATAATATGGGGTGAAAACGACCGCATCATCAGC
EST: gi|192319629|gb|FK013713.1|FK013713
EST:     TGAGATGTTGTATTGTGTAATTCCGTGGAGAATCCAAGAATAATAATAAT                         GTAAAACAGAAAACACTGATAATATGGGGTGAAAACGACCGCATCATCAGC
genomic: TGAGATGTTGTATTGTGTAATTCCGTGGAGAATCCAAGAATAATAATAATgtaaataact ... ttttaaacagGTAAAACAGAAAACACTGATAATATGGGGTGAAAACGACCGCATCATCAGC
EST: gi|254347325|gb|GR853574.1|GR853574
EST:     TGAGATGTTGTATTGTGTAATTCCGTGGAGAATCCAAGAATAATAATAAT                         GTAAAACAGAAAACACTGATAATATGGGGTGAAAACGACCGCATCATCAGC
genomic: TGAGATGTTGTATTGTGTAATTCCGTGGAGAATCCAAGAATAATAATAATgtaaataact ... ttttaaacagGTAAAACAGAAAACACTGATAATATGGGGTGAAAACGACCGCATCATCAGC
EST: gi|192301633|gb|FG994369.1|FG994369
EST:     TGAGATGTTGTATTGTGTAATTCCGTGGAGAGTCCAAGAATAATAATAAT                         GTAAAACAGAAAACACTGATAATATGGGGGTGAAAACGACCGCATCATCAG
genomic: TGAGATGTTGTATTGTGTAATTCCGTGGAGAATCCAAGAATAATAATAATgtaaataact ... ttttaaacagGTAAAACAGAAAACACTGATAATATGGGG-TGAAAACGACCGCATCATCAG
EST: gi|192319630|gb|FK013714.1|FK013714
EST:     TGAGATGTTGTATTGTGTAATTCCGTGGAGAATCCAAGAATAATAATAAT                         GTAAAACAGAAAACACTGATAATATGGGGTGAAAACGACCGCATCATCAGC
genomic: TGAGATGTTGTATTGTGTAATTCCGTGGAGAATCCAAGAATAATAATAATgtaaataact ... ttttaaacagGTAAAACAGAAAACACTGATAATATGGGGTGAAAACGACCGCATCATCAGC
EST: gi|151403964|gb|EV273774.1|EV273774
EST:     TGAGATGTTGTATTGTGTAATTCCGTGGAGAATCCAAGAATAATAATAAT                         GTAAAACAGAAAACACTGATAATATGGGGTGAAAACGACCGCATCATCAGC
genomic: TGAGATGTTGTATTGTGTAATTCCGTGGAGAATCCAAGAATAATAATAATgtaaataact ... ttttaaacagGTAAAACAGAAAACACTGATAATATGGGGTGAAAACGACCGCATCATCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attccattttttttatttccttctcaaaaagatgttttgatttttttttaaacagGTAAAACAGAAAACACTGATAATATGGGGTGAAAACGACCGCATCATCAGCAATAAGTTTGCAGTGGTTAGTTACTTTGTGACACTTTTTATAACATGTT
                                  ttttgat  putative branch site (score: 4)
                                  ttttgattttttttt  CT-rich tract
                       tcaaaaagatgttttg  TA-rich tract