1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttggtatgctatgtctgacattgcaattgttgagcatgtttgactcctatgttcatgattcttgcgtgctcctgttgataagtttgacttgtccatgcagTAATGCCAGATTTTGCACAAGTCTACAGCTTCATCGGCAGTGTATTCGATCCAAATTCAACTAATCACCTACAGAAACTACGACAGATGGATCCATTAAA
species | Glycine max |
transcript | GLYMA07G07200.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGGCCAAGTAGCAAAAGGACTAATCAAGGTGACCAGGAGCCAATTAAAG TAATGCCAGATTTTGCACAAGTCTACAGCTTCATCGGCAGTGTATTCGATCEST: gi|209716263|gb|BW657566.1|BW657566
genomic: TTGGCCAAGTAGCAAAAGGATTAATCAAGGTGACCAGGAGCCAATTAAAGgttggaatgc ... gtccatgcagTAATGCCAGATTTTGCACAAGTCTACAGCTTCATCGGCAGTGTATTCGATC
EST: TCAAGGTGACCAGGAGCCAATTAAAG TAATGCCAGATTTTGCACAAGTCTACAGCTTCATCGGCAGTGTATTCGATC
genomic: TCAAGGTGACCAGGAGCCAATTAAAGgttggaatgc ... gtccatgcagTAATGCCAGATTTTGCACAAGTCTACAGCTTCATCGGCAGTGTATTCGATC
cctatgttcatgattcttgcgtgctcctgttgataagtttgacttgtccatgcagTAATGCCAGATTTTGCACAAGTCTACAGCTTCATCGGCAGTGTATTCGATCCAAATTCAACTAATCACCTACAGAAACTACGACAGATGGATCCATTAAA
gtttgac putative branch site (score: 4)
cttgtcc CT-rich tract
ataagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggtatgctatgtctgacattgcaattgttgagcatgtttgactcctatgttcatgattcttgcgtgctcctgttgataagtttgacttgtccatgcagTAATGCCAGATTTTGCACAAGTCTACAGCTTCATCGGCAGTGTATTCGATCCAAATTCAACTAATCACCTACAGAAACTACGACAGATGGATCCATTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- -gtatgct
- - - - - atgtctg
- - - - - - - - - cattgca
- - - - - - - - - - - - - - - - -gcatgtt
- - - - - - - - - - - - - - - - - - - - - - -cctatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttgc