1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aagttcacaatgcacctttcattttttcacacctcattcacacaccaacaaacactgatatattttcataattcatttatatattgttttgcaaacacagGTTATTAGTACTGCAAGGACATGCAATTGCATTTTGATTGTCCTTGATGCAATAAAGCCAATAACTCACAAGCGTCTTATAGAAAAAGAGCTAGAGGGAT
species | Glycine max |
transcript | GLYMA06G15180.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCCCGGAATTATCGAGGGTGCTAAGGATGGAAAGGGTAGAGGAAAGCAG GTTATTAGTACTGCAAGGACATGCAATTGCATTTTGATTGTCCTTGATGCAEST: gi|192294592|gb|FG986441.1|FG986441
genomic: TCCCCGGAATTATCGAGGGTGCTAAGGATGGAAAGGGTAGAGGAAGGCAGgtaaaaaaag ... gcaaacacagGTTATTAGTACTGCAAGGACATGCAATTGCATTTTGATTGTCCTTGATGCA
EST: TCCCCGGAATTATCGAGGGTGCTAAGGATGGAAAGGGTAGAGGAAGGCAG GTTATTAGTACTGCAAGGACATGCAATTGCATTTTGATTGTCCTTGATGCAEST: gi|254325516|gb|GR838397.1|GR838397
genomic: TCCCCGGAATTATCGAGGGTGCTAAGGATGGAAAGGGTAGAGGAAGGCAGgtaaaaaaag ... gcaaacacagGTTATTAGTACTGCAAGGACATGCAATTGCATTTTGATTGTCCTTGATGCA
EST: TCCCCGGAATTATCGAGGGTGCTAAGGATGGAAAGGGTAGAGGAAGGCAG GTTATTAGTACTGCAAGGACATGCAATTGCATTTTGATTGTCCTTGATGCA
genomic: TCCCCGGAATTATCGAGGGTGCTAAGGATGGAAAGGGTAGAGGAAGGCAGgtaaaaaaag ... gcaaacacagGTTATTAGTACTGCAAGGACATGCAATTGCATTTTGATTGTCCTTGATGCA
caacaaacactgatatattttcataattcatttatatattgttttgcaaacacagGTTATTAGTACTGCAAGGACATGCAATTGCATTTTGATTGTCCTTGATGCAATAAAGCCAATAACTCACAAGCGTCTTATAGAAAAAGAGCTAGAGGGAT
cactgat putative branch site (score: 3)
atatattttcataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagttcacaatgcacctttcattttttcacacctcattcacacaccaacaaacactgatatattttcataattcatttatatattgttttgcaaacacagGTTATTAGTACTGCAAGGACATGCAATTGCATTTTGATTGTCCTTGATGCAATAAAGCCAATAACTCACAAGCGTCTTATAGAAAAAGAGCTAGAGGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - tgcacct
- - - - - - - - - - - - - tcacacc
- - - - - - - - - - - - - - - - - - - -acacacc
- - - - - - - - - - - - - - - - - - - - - - - - caaacac