1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttttctagtttgttagtaatatatctaattcaattactacatcatgttgccatgatcatttatgcaactaatctgagatttttttttttttttttactagCTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGACAGAGATTTGGACTTGATGGCAAGGGTGACAGAACATTGGGAGAAATTGCTGGGAACTTGA
species | Glycine max |
transcript | GLYMA06G13100.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGATAATAGGAAACAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTG CTTGATTCC-TGAAAGC-GAAGGAGAGCTTGGTGATCAGACAGAGATTTGGEST: gi|19453504|gb|BM954914.1|BM954914
genomic: GTGATAATAGGAAACAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTGgtaacaacta ... tttttactagCTTGATTCCCTGAA-GCCGAAGGAGAGCTTGGTGATCAGACAGAGATTTGG
EST: GTGATAATAGGAAACAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTG CTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGACAGAGATTTGGAEST: gi|22931843|gb|BU548982.1|BU548982
genomic: GTGATAATAGGAAACAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTGgtaacaacta ... tttttactagCTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGACAGAGATTTGGA
EST: GTGATAATAGGAAACAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTG CTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGACAGAGATTTGGAEST: gi|27808937|gb|CB063359.1|CB063359
genomic: GTGATAATAGGAAACAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTGgtaacaacta ... tttttactagCTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGACAGAGATTTGGA
EST: GTGATAATAGGAAACAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTG CTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGACAGAGATTTGGA
genomic: GTGATAATAGGAAACAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTGgtaacaacta ... tttttactagCTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGACAGAGATTTGGA
gttgccatgatcatttatgcaactaatctgagatttttttttttttttttactagCTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGACAGAGATTTGGACTTGATGGCAAGGGTGACAGAACATTGGGAGAAATTGCTGGGAACTTGA
aactaat putative branch site (score: 2)
tttttttttttttttt putative PPT
aactaatctgagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctagtttgttagtaatatatctaattcaattactacatcatgttgccatgatcatttatgcaactaatctgagatttttttttttttttttactagCTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGACAGAGATTTGGACTTGATGGCAAGGGTGACAGAACATTGGGAGAAATTGCTGGGAACTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA