1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgatgttcttcatgcataatgcacatgttgatgtcctgtaacatttatcaatctttgtgcatcttaaataagtggcttgtgatgtgatcttggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGATCTATGACAAGAAATTTGCAGAACTTTCAGGGAATGACATATTCAAAG
species | Glycine max |
transcript | GLYMA06G10930.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCCTCGCATACTGGAGTTGAAGGGAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGEST: gi|209714512|gb|BW684875.1|BW684875
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGEST: gi|193386200|gb|FK351660.1|FK351660
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: GAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGEST: gi|208298269|gb|GE095458.1|GE095458
genomic: GAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGEST: gi|209723463|gb|BW669462.1|BW669462
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAG-CAGCAAAGAAGEST: gi|193708306|gb|FK643214.1|FK643214
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: GTTGAAAGGAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGEST: gi|214009384|gb|DB988609.1|DB988609
genomic: GTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: AGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAGCTCCGCTGGGAAGACAGCAAAGAAGEST: gi|193660441|gb|FK604793.1|FK604793
genomic: AGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: TAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGEST: gi|214008443|gb|DB990009.1|DB990009
genomic: TAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACACAGCTGGGAAG-CAGCAAAGAAGEST: gi|193309488|gb|FK277108.1|FK277108
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: GAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGEST: gi|207844790|gb|GD813589.1|GD813589
genomic: GAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCGAAGAAGEST: gi|208125995|gb|GD922089.1|GD922089
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAGGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGEST: gi|15287454|gb|BI471345.1|BI471345
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGEST: gi|208199093|gb|GD995036.1|GD995036
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCGAAGAAGEST: gi|193385953|gb|FK351581.1|FK351581
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: GTTGAAAGGAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGEST: gi|193339100|gb|FK303985.1|FK303985
genomic: GTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: GAGAACGTCAT GTCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAEST: gi|192314071|gb|FK010351.1|FK010351
genomic: GAGAACGTCATgtatgcacca ... tggtttacagG-CTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAA
EST: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGEST: gi|208209593|gb|GE001862.1|GE001862
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGEST: gi|208062023|gb|GD856811.1|GD856811
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCGAAGAAGEST: gi|51336048|gb|CO979914.1|CO979914
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGEST: gi|208121956|gb|GD918951.1|GD918951
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
tatcaatctttgtgcatcttaaataagtggcttgtgatgtgatcttggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGATCTATGACAAGAAATTTGCAGAACTTTCAGGGAATGACATATTCAAAG
atcttaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgttcttcatgcataatgcacatgttgatgtcctgtaacatttatcaatctttgtgcatcttaaataagtggcttgtgatgtgatcttggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGATCTATGACAAGAAATTTGCAGAACTTTCAGGGAATGACATATTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA