Sequence
atgc intronic sequence ATGC exonic sequencegtctgtggattattcttggccttcagtttatttctcatgtttcattcttaagtctcttgcttacaaattaaaccatggctttttccttggcctgctttctttgtccagggatgcagtgtatcttggttgtgtctgcttactttaacttctttcttgttctttatcatattcagATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAG
Basic information
species | Glycine max |
transcript | GLYMA06G08480.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G08480.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os01g40840.2 (Oryza sativa), 3'ss of exon 5
gtctgtggattattcttggccttcagtttatttctcatgtttcattcttaagtctcttgcttacaaattaaaccatggctttttccttggc--ctgctttctttgtccagggatgcagtgtatcttggttgtgtctgcttactttaacttctttcttgttctttatcatattcagATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAG
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------------------------------------gtgtgtgattgtttgattc------tgcatatcaattcttaacaaattcggtagctgctgattcattcttctgttgctgaaaaggagcatgcttg---------accatcttttcctttctttcttctaaaata----gATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAG
upper sequence: GLYMA06G08480.2 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G094039_T06 (Zea mays), 3'ss of exon 5
gtctgtggattattcttggccttcagtttatttctcatgtttcattcttaagtctcttgcttacaaattaaaccatggctttttccttggcctgctttctttgtccagggatgcagtgtatcttggttgtgtctgcttactttaacttctttcttgttctttatcatattcagATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAG
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---------------------------------------------------gtgtgttagttattgcttgattctgcacatcaattattagctaatttggtagcattggcttcacttttctattgcttcaaaggggcagtgttaacca---tcttttcttttgtaa----cagATATGCATGAGTTGCGGCTTATCCACACTGATCTGAAGCCAGAAAACATACTACTTGTCTCTTCTGAGTATATAAAAGTTCCAAGTACAAAG
upper sequence: GLYMA06G08480.2 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G094039_T01 (Zea mays), 3'ss of exon 4
gtctgtggattattcttggccttcagtttatttctcatgtttcattcttaagtctcttgcttacaaattaaaccatggctttttccttggcct--gctttctttgtccagggatgcagtgtatcttggttgtgtctgcttactttaacttctttcttgttctttatcatattcagATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAG
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-----------------------------------------------------cttgattctgcacatcaattattagctaatttggtagcattggcttcacttttctattgcttcaaagg-----ggcagtgt----------taacca---tcttttcttttgtaa----cagATATGCATGAGTTGCGGCTTATCCACACTGATCTGAAGCCAGAAAACATACTACTTGTCTCTTCTGAGTATATAAAAGTTCCAAGTACAAAG
upper sequence: GLYMA06G08480.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0008g04220.t01 (Vitis vinifera), 3'ss of exon 6
gtctgtggattattcttggccttcagtttatttctcatgtttcattcttaagtctcttgcttacaaattaaaccatggctttttccttggcctgctttctttgtccagggatgcag---tgtatcttggttgtgtc-tgcttactttaacttctttcttgtt-ctttatcatattca---gATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAG
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gtgtgtgcattgtccttggcccttgctttatctctcattctgtatttt--attttctaacctaaccaattacccagatctgttttttgggcctgttttgtttgtccaggactgtacctctgtattatgtttgtgtcctttttgttttaacatgattttccttgctttacaatatccaacagATGTGCATGATTTATGCTTAATCCATACTGACCTGAAGCCAGAAAATATACTTCTTGTATCATCTGAGTGTATAAAGCTTCCTAGCTCCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208186047|gb|GD986760.1|GD986760EST: TTTTGGAATCTGTAGCAT ATATGCATGAACTACGCCTAATCCACACTG-CCTAAAGCCNGAAAATATAC
genomic: TTTTGGAATCTGTAGCATgtctgtggat ... tcatattcagATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATAC
EST:
gi|193315737|gb|FK279395.1|FK279395EST: TGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCAT ATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATAC
genomic: TGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATgtctgtggat ... tcatattcagATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatcttggttgtgtctgcttactttaacttctttcttgttctttatcatattcagATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAG
cttctttcttgttctt CT-rich tract
ttctttatcatatt TA-rich tract