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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaataaacaaattttctaagccccacccatttcttttgctaggggggtaggtgtgaattcttgattcagaaattacattgatctacacattgacatttgttttcactttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGTTCAAAAACACAGCAG

Basic information

species Glycine max
transcript GLYMA06G02580.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G02580.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0001g14670.t01 (Vitis vinifera), 3'ss of exon 5
gtatgaaataaacaaattttctaagccccacccatttcttttgctaggggggtaggtgtgaattcttgattcagaaattacattgatctacacattgacatttgttttcactttggtt--gaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGTTCAAAAACACAGCAG
||| | |  |       ||    ||         || ||| |  |       | || | | ||| ||  |  |    ||   || ||||           |||||| |  | |||  |   |||||||||||| | |  ||| |||||||||| ||||| || || || ||||| |||||||||||||||
gtaaggatcatggccgcttaaccagtaaagaaatttccttcttgttttttttttgggggggatttttagtatacttgtt--cttaatct-----------tttgttctggccttgcctctaaagGGAGAAGAACTGAAGAAAGTGATTGGTGCGCCTGCCTATATTGAATGTAGCTCAAAAACACAGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16349524|gb|BI975119.1|BI975119
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|6913146|gb|AW394676.1|AW394676
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|16348169|gb|BI973764.1|BI973764
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|31467362|gb|CD409390.1|CD409390
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCCATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|31561454|gb|CD487292.1|CD487292
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|18040600|gb|BM308894.1|BM308894
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|24205273|gb|BU964526.1|BU964526
EST:     GCAANNNNNNNATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: GCAATTTTTT-ATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|9258738|gb|BE346885.1|BE346885
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|298164350|gb|HO013995.1|HO013995
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|193630757|gb|FK584142.1|FK584142
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|17021451|gb|BM092485.1|BM092485
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|31468571|gb|CD410599.1|CD410599
EST:     AGTACCCATAACTACCACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|19052868|gb|BM731535.1|BM731535
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|5676830|gb|AI937960.1|AI937960
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|19269284|gb|BM885540.1|BM885540
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|9986967|gb|BE661075.1|BE661075
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcagaaattacattgatctacacattgacatttgttttcactttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGTTCAAAAACACAGCAG
                         cattgac  putative branch site (score: 3)
                                 tttgttttcacttt  CT-rich tract
       aaattacatt  TA-rich tract