1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttttggattctaattccaagttagtttggcacctgctctagcctttgtttacagttttatttagtttaatttttttgttcaactttaatattagcatcattactgtcagGTCAAGCATGGCAACTGTGGACCCGTTGAATCAATAGAAGTCCAGCGGCAACTTGTTGCTCGTACCCCAGTCTTTTATCGGCTGGAACAATTGGACAATG
species | Glycine max |
transcript | GLYMA05G29820.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAG GTCAAGCATTGGCA-CTGTGGACCCGTTGAAEST: gi|9258053|gb|BE346200.1|BE346200
genomic: AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAGgttttggatt ... ttactgtcagGTCAAGCAT-GGCAACTGTGGACCCGTTGAA
EST: AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAN GTCAAGCATGGCAACTGTGGACCCGTTGAATCAATAGAAGTCCAGCGGCAAEST: gi|120532592|gb|EH260725.1|EH260725
genomic: AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAGgttttggatt ... ttactgtcagGTCAAGCATGGCAACTGTGGACCCGTTGAATCAATAGAAGTCCAGCGGCAA
EST: AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAG GTCAAGCATGGCAACTGTGGACCCGTTGAATEST: gi|11412269|gb|BF424280.1|BF424280
genomic: AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAGgttttggatt ... ttactgtcagGTCAAGCATGGCAACTGTGGACCCGTTGAAT
EST: AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAG GTCAAGCATGGCAACTGTGGACCCGTTGAATCAATAGAAGTCCAGCGGCAAEST: gi|26057180|gb|CA800094.1|CA800094
genomic: AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAGgttttggatt ... ttactgtcagGTCAAGCATGGCAACTGTGGACCCGTTGAATCAATAGAAGTCCAGCGGCAA
EST: AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAG GTCAAGCATGGCAACTGTGGACCCGTTGAATCAATAGAAGTCCAGCGGCAA
genomic: AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAGgttttggatt ... ttactgtcagGTCAAGCATGGCAACTGTGGACCCGTTGAATCAATAGAAGTCCAGCGGCAA
ttttatttagtttaatttttttgttcaactttaatattagcatcattactgtcagGTCAAGCATGGCAACTGTGGACCCGTTGAATCAATAGAAGTCCAGCGGCAACTTGTTGCTCGTACCCCAGTCTTTTATCGGCTGGAACAATTGGACAATG
ctttaat putative branch site (score: 4)
tttagtttaatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttggattctaattccaagttagtttggcacctgctctagcctttgtttacagttttatttagtttaatttttttgttcaactttaatattagcatcattactgtcagGTCAAGCATGGCAACTGTGGACCCGTTGAATCAATAGAAGTCCAGCGGCAACTTGTTGCTCGTACCCCAGTCTTTTATCGGCTGGAACAATTGGACAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA