1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgtttatgttattgttgttgttgttgtgagtgtgtgtattcaaattcaattcattcttaaaactagtaattatttctggctgtgatgtcattctgtgtatattccagGTGGATCCTCTTACACACCAAGTGAAGCTATGTGACTTTGGAAGTGCAAAAGTTCTA
species | Glycine max |
transcript | GLYMA04G06760.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACACTGTTCCCAAAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTG GTGGATCCTCTTACACACCAAGTGAAGCTATGTGACTTTGGAAGTGCAAAAEST: gi|213605463|gb|DB966956.1|DB966956
genomic: ACACTGTTCCCAAAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGgtttgtttat ... tatattccagGTGGATCCTCTTACACACCAAGTGAAGCTATGTGACTTTGGAAGTGCAAAA
EST: ACACTGTTCCCAAAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTG GTGGATCCTCTTACACACCAAGTGAAGCTATGTGACTTTGGAAGTGCAAAAEST: gi|209716661|gb|BW654294.1|BW654294
genomic: ACACTGTTCCCAAAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGgtttgtttat ... tatattccagGTGGATCCTCTTACACACCAAGTGAAGCTATGTGACTTTGGAAGTGCAAAA
EST: ACACTGTTCCCAAAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTG GTGGATCCTCTTACACACCAAGTGAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ACACTGTTCCCAAAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGgtttgtttat ... tatattccagGTGGATCCTCTTACACACCAAGTGAAGCTATGTGACTTTGGAAGTGCAAAA
attcttaaaactagtaattatttctggctgtgatgtcattctgtgtatattccagGTGGATCCTCTTACACACCAAGTGAAGCTATGTGACTTTGGAAGTGCAAAAGTTCTA
taaaactagtaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttatgttattgttgttgttgttgtgagtgtgtgtattcaaattcaattcattcttaaaactagtaattatttctggctgtgatgtcattctgtgtatattccagGTGGATCCTCTTACACACCAAGTGAAGCTATGTGACTTTGGAAGTGCAAAAGTTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG