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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttccgcaactcatcatcctttttttggttttctattaatataaaaaaaaatggtctcatcctcatatttataaagaccacatttgcctaagtaaccatgttttcccagttgaagcttgttacaaaaagtatacttacttgtttgttcgaaccttggtgggatgtttagGATGTAAGGGAACAGCTTGATGAATCCCTTCCTGGAACAGGAGGGGGCCAGAATCCTAAAGACAGTTTTCTTGTGAAATTTCTCTTTCTGCTACCATTCT

Basic information

species Glycine max
transcript GLYMA03G40980.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208255782|gb|GE052761.1|GE052761
EST:     CTTGGGACTGGTGGACGTCTTGGCTTTTGAAACCTGTTGATGTCTGGCAG                         GATGTAAGGGAGCAGCTTGATGAATCCCTTCCTGGAACAGGAGGGGGCCAG
genomic: CTTGGGACTGGTGGACGTCTTGGCTTTTGAAACCTGTTGATGTTTGGCAGgtacttccgc ... ggatgtttagGATGTAAGGGAACAGCTTGATGAATCCCTTCCTGGAACAGGAGGGGGCCAG
EST: gi|14126397|gb|BG790835.1|BG790835
EST:     CTTGGGACTGGTGGACGTCTTGGCTTTTGAAACCTGTTGATGTTTGGCAG                         GATGTAAGGGAACAGCTTGATGAATCCCTTCCTGGAACAGGAGGGGGCCAG
genomic: CTTGGGACTGGTGGACGTCTTGGCTTTTGAAACCTGTTGATGTTTGGCAGgtacttccgc ... ggatgtttagGATGTAAGGGAACAGCTTGATGAATCCCTTCCTGGAACAGGAGGGGGCCAG
EST: gi|14012150|gb|BG727072.1|BG727072
EST:     CTTGTTACTGGTGGACGTCTTGGCTTTTGAAACCTGTTGATGTTTGGCAG                         GATGTAAGGGAACAGCTTGATGAATCCCTTCCTGGAACAGGAGGGGGCCAG
genomic: CTTGGGACTGGTGGACGTCTTGGCTTTTGAAACCTGTTGATGTTTGGCAGgtacttccgc ... ggatgtttagGATGTAAGGGAACAGCTTGATGAATCCCTTCCTGGAACAGGAGGGGGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgttacaaaaagtatacttacttgtttgttcgaaccttggtgggatgtttagGATGTAAGGGAACAGCTTGATGAATCCCTTCCTGGAACAGGAGGGGGCCAGAATCCTAAAGACAGTTTTCTTGTGAAATTTCTCTTTCTGCTACCATTCT
                 tacttac  putative branch site (score: 1)
     ttacaaaaagtata  TA-rich tract