1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgtgtaaaattagttgactgaaattccaactactatttctggtggctactttctactttactagtcacacaataagaacattgatgcattaataatgtcaatatattttaatttttctttgccttttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAG
species | Glycine max |
transcript | GLYMA03G39530.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAEST: gi|151403727|gb|EV273537.1|EV273537
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACA
EST: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAEST: gi|7692294|gb|AW760404.1|AW760404
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACA
EST: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCATAGATGAACAACAEST: gi|207740500|gb|GD713766.1|GD713766
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACA
EST: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAEST: gi|192295129|gb|FG986848.1|FG986848
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACA
EST: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAEST: gi|192303311|gb|FG995619.1|FG995619
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACA
EST: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAATATGGGATATTGAGTTCAAAGATGAACAACAEST: gi|298184842|gb|HO030055.1|HO030055
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACA
EST: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAEST: gi|193654550|gb|FK597860.1|FK597860
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACA
EST: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAATATGGAATATTGEST: gi|9903152|gb|BE612120.1|BE612120
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTG
EST: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATANCCCACAGAATGTCTG CAACGGAAAGTTG-TGTTCAATATGGAATATTGAGTTCAAAGATGAGCAACEST: gi|18040959|gb|BM309253.1|BM309253
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAA-GTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAAC
EST: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAEST: gi|24135512|gb|BU926022.1|BU926022
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACA
EST: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAEST: gi|9987385|gb|BE661493.1|BE661493
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACA
EST: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAEST: gi|151397822|gb|EV267695.1|EV267695
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACA
EST: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAEST: gi|58019780|gb|CX706522.1|CX706522
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACA
EST: CTGCTGCTAGGCATAGCCCACAGATTTTCTG CAACGGAAGTGGGTGTTCAATATGGAATATTGAGTTCAAAGATGACCAACAEST: gi|192313101|gb|FK004691.1|FK004691
genomic: CTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACA
EST: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAEST: gi|10231910|gb|BE800798.1|BE800798
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACA
EST: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAEST: gi|151399910|gb|EV269781.1|EV269781
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACA
EST: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAEST: gi|192313102|gb|FK004692.1|FK004692
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACA
EST: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAEST: gi|9203900|gb|BE330124.1|BE330124
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACA
EST: GAGCTGGCTGTGGTGATGTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAATATGGAATTAT-GAGTTCAA-GATGAACCAA
genomic: GAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAATATGGAAT-ATTGAGTTCAAAGATGAAC-AA
ttgatgcattaataatgtcaatatattttaatttttctttgccttttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAG
ttttaat putative branch site (score: 3)
ttttaatttttctttg CT-rich tract
attaataatgtcaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtaaaattagttgactgaaattccaactactatttctggtggctactttctactttactagtcacacaataagaacattgatgcattaataatgtcaatatattttaatttttctttgccttttgtttatagCAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG