1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgttgagatatagaagaagcttatgtttttcatttacttttccttttaatagaaacctaaacttaatcagaaagtcacttgttgaatacctgttttgcagGAAGAAAACCCATCACGAGAGAGCACAATTGTAAGAACAGCTGGTAAACTTACTCCCTTCCAATTCAACAGGATTCCAGAGATCATTGATGGTAATGTTC
species | Glycine max |
transcript | GLYMA03G29320.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCATTAATGGCTTGGTATCATCTTTTGTGGCTTTATTGCAG GAAGAAAACCCATCACGAGAGAGCACAATTGTAAGAACAGCTGGTAAACTTEST: gi|207768202|gb|GD740838.1|GD740838
genomic: AGCATTAATGGCTTGGTATCATCTTTTGTGGCTTTATTGCAGgtataatttt ... tgttttgcagGAAGAAAACCCATCACGAGAGAGCACAATTGTAAGAACAGCTGGTAAACTT
EST: TGTGCTCTAGCATTAATGGCTTGGTATCATCTTTTGTGGCTTTATTGCAG GAAGAAAACCCAATCACGAGAGAGCACAATTGTAAGAACAGCTGGTAA-CT
genomic: TGTGCTCTAGCATTAATGGCTTGGTATCATCTTTTGTGGCTTTATTGCAGgtataatttt ... tgttttgcagGAAGAAAACCCA-TCACGAGAGAGCACAATTGTAAGAACAGCTGGTAAACT
ttaatagaaacctaaacttaatcagaaagtcacttgttgaatacctgttttgcagGAAGAAAACCCATCACGAGAGAGCACAATTGTAAGAACAGCTGGTAAACTTACTCCCTTCCAATTCAACAGGATTCCAGAGATCATTGATGGTAATGTTC
cctgtttt CT-rich tract
taaacttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgagatatagaagaagcttatgtttttcatttacttttccttttaatagaaacctaaacttaatcagaaagtcacttgttgaatacctgttttgcagGAAGAAAACCCATCACGAGAGAGCACAATTGTAAGAACAGCTGGTAAACTTACTCCCTTCCAATTCAACAGGATTCCAGAGATCATTGATGGTAATGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
tgttgag
- - - - - - - - - gcttatg
- - - - - - - - - - - - - - - - - - - - - - - -aatagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgttg