1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttatttgattctgagatgagagcatctgggtcattttgcagatttaagttagttgatgttgcattttgcattaataacgtggaccctatgactattacagGGAAATCATGCATGCAATGTGGAAACCTCAAAAGTTCAAATATATCTATCTTTATGCTACCCTTTATGTATTCACACTCACCATACCATCTTCTGTTGCC
species | Glycine max |
transcript | GLYMA02G42290.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGGGAGCCACCAACATTCTCTACACTTTCGGCGGGCACGCCGTCACAGT GGAAATCATGCATGCAATGTGGAAACCTCAAAAGTTCAAATATATCTATCTEST: gi|18733933|gb|BM527893.1|BM527893
genomic: ACGGGAGCCACCAACATTCTCTACACTTTCGGCGGGCACGCCGTCACAGTgtaagacccc ... actattacagGGAAATCATGCATGCAATGTGGAAACCTCAAAAGTTCAAATATATCTATCT
EST: ACGGGAGCCACCAACATTCTCTACACTTTCGGCGGGCACGCCGTCACAGT GGAAATCATGCATGCAATGTGGAAACCTCAAAAGTTCAAATATATCTATCT
genomic: ACGGGAGCCACCAACATTCTCTACACTTTCGGCGGGCACGCCGTCACAGTgtaagacccc ... actattacagGGAAATCATGCATGCAATGTGGAAACCTCAAAAGTTCAAATATATCTATCT
aagttagttgatgttgcattttgcattaataacgtggaccctatgactattacagGGAAATCATGCATGCAATGTGGAAACCTCAAAAGTTCAAATATATCTATCTTTATGCTACCCTTTATGTATTCACACTCACCATACCATCTTCTGTTGCC
taataac putative branch site (score: 1)
attttgcattaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatttgattctgagatgagagcatctgggtcattttgcagatttaagttagttgatgttgcattttgcattaataacgtggaccctatgactattacagGGAAATCATGCATGCAATGTGGAAACCTCAAAAGTTCAAATATATCTATCTTTATGCTACCCTTTATGTATTCACACTCACCATACCATCTTCTGTTGCC
- - - gattctg
- - - - - - - - - - -gcatctg
- - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - -gttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctatg