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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctagatatcaatattgtcttatatcttttttctttaaaaaaaaaaaattgtcctgatgtgttatgtaactaattgaacatttggattttctccttggttgatttcagAGGACTTGAGTCAATTAAAGACAGAGAGGTCTGCTGCTATATGATTTCATGCAAGGATTCTGTTAACATAGATGTAGTCATTGACTGGCTAATCAAACAC

Basic information

species Glycine max
transcript GLYMA02G41170.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G41170.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os02g49980.1 (Oryza sativa), 3'ss of exon 5
gtgagttctagatatcaatattgtcttatatcttttttctttaaaaaaaaaaaattgtcctgatgtgttatgtaactaattgaacatttggattttctccttggttgatttcagAGGACTTGAGTCAATTAAAGACAGAGAGGTCTGCTGCTATATGATTTCATGCAAGGATTCTGTTAACATAGATGTAGTCATTGACTGGCTAATCAAACAC
|||||||     || |  |  ||| | |  |  |  | ||| |      ||  | ||   |||||| | |        | ||||    |||  ||||||     |  |||||||||| || || |  || || ||| | || || |||||||| ||||| || |||||||| ||||| ||||||||||| |||||||| ||||| ||||| |||
gtgagttt--actaccttttctgtgtgagcttgtcatccttgagtggctaattactgaa-tgatgtttca--------actgaag---tggtctttctc----atgtatttcagAGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTGCAAGGACTCTGTAAACATAGATGTTGTCATTGATTGGCTTATCAAGCAC

upper sequence: GLYMA02G41170.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G171060_T02 (Zea mays), 3'ss of exon 6
gtgagttctagatatcaatattgtcttatatcttttttctttaaaaaaaaaaaattgtcctgatgtgttatgtaactaattgaacatttggattttctccttggttgatttcagAGGACTTGAGTCAATTAAAGACAGAGAGGTCTGCTGCTATATGATTTCATGCAAGGATTCTGTTAACATAGATGTAGTCATTGACTGGCTAATCAAACAC
                    |   || |    |  |||  |||   | ||  |    | |||     | || |  |   |  | |  |  | | |  ||| |  ||| |||||| ||||| || |  || || ||| | ||||| || ||||| ||||| || || ||||||||||| |||||||| || ||||| |||||||| ||||| |||
-------------------gtaagctcaaccttcatttgcttactcataattatactttctg---catgatatctcagctcaagctctctgctctcttccctttttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTGTAAGGATTCTGTGAACATAGACGTCGTCATCGACTGGCTTATCAAGCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393791|gb|EV263666.1|EV263666
EST:     AAAATTGACAAGTCAGAAGCTCTTTCTAAGCAAGCATTGGTAGATCAGCT                         AGGACTTGAGTCAATTAAAGACAGAGAGGTCTGCTGCTATATGATTTCATG
genomic: AAAATTGACAAGTCAGAAGCTCTTTCTAAGCAAGCATTGGTAGATCAGCTgtgagttcta ... ttgatttcagAGGACTTGAGTCAATTAAAGACAGAGAGGTCTGCTGCTATATGATTTCATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatgtgttatgtaactaattgaacatttggattttctccttggttgatttcagAGGACTTGAGTCAATTAAAGACAGAGAGGTCTGCTGCTATATGATTTCATGCAAGGATTCTGTTAACATAGATGTAGTCATTGACTGGCTAATCAAACAC
                                 ttttctccttggtt  CT-rich tract
        ttatgtaactaatt  TA-rich tract