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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattaattggggaaactgcatgttcgccttacttaacaagtcttaatatttcattataattagaagttgaaataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACCATTTTGATTGATCAG

Basic information

species Glycine max
transcript GLYMA02G33350.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296776|gb|FG993074.1|FG993074
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTC-ACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|15000383|gb|BI321197.1|BI321197
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCTCTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|193448655|gb|FK413380.1|FK413380
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|193334757|gb|FK300577.1|FK300577
EST:     GACAGAAGGCACTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|9899509|gb|BE608477.1|BE608477
EST:     GACAGAATGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATGACGATGCCACTCCGTTTG
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTC-GTTTG
EST: gi|208139460|gb|GD933928.1|GD933928
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|193410829|gb|FK376368.1|FK376368
EST:     GACAGAAGGCACTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|193719814|gb|FK655742.1|FK655742
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|151402748|gb|EV272561.1|EV272561
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|151409952|gb|EV279760.1|EV279760
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|193400452|gb|FK366693.1|FK366693
EST:     GACAGAAGGCACTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTACCCAATGTTTCTTCCAC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTT-CCCAATGTTTCTTCCAC
EST: gi|58017950|gb|CX704692.1|CX704692
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|7234496|gb|AW569833.1|AW569833
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|151409483|gb|EV279291.1|EV279291
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|15202064|gb|BI425203.1|BI425203
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|208081956|gb|GD881264.1|GD881264
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|57575937|gb|CX548908.1|CX548908
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|151396504|gb|EV266381.1|EV266381
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|58020784|gb|CX707526.1|CX707526
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|192314973|gb|FK010791.1|FK010791
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|10255594|gb|BE823360.1|BE823360
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|151404093|gb|EV273903.1|EV273903
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|22927529|gb|BU544668.1|BU544668
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|13789108|gb|BG651699.1|BG651699
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|192298137|gb|FG991417.1|FG991417
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|192296777|gb|FG993075.1|FG993075
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATTTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|58021316|gb|CX708057.1|CX708057
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATTTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|15286136|gb|BI470027.1|BI470027
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
EST: gi|58017299|gb|CX704041.1|CX704041
EST:     GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAG                         GATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC
genomic: GACAGAAGGCATTCTCAAATTATCTTGGTGACAATAAATCTGAGTGGGAGgtaaattaat ... aataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccttacttaacaagtcttaatatttcattataattagaagttgaaataatgcagGATTACGATGCCACTCGTTTGGTAACAAAGTTTCCCAATGTTTCTTCCACCATTTTGATTGATCAG
               tcttaat  putative branch site (score: 3)
               tcttaatatttcatta  TA-rich tract