Sequence
atgc intronic sequence ATGC exonic sequence...tttaaaaattcccactattatctagttgattggtaacgcaggtaatgctgattgcctcctttaatatttattgtttaaaaatggtgttttctcatcctagGTGCAAGAGGCTGCTTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATGCTATGTCCGTGGATTTGGATG
Basic information
species | Glycine max |
transcript | GLYMA02G25240.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G25240.1 (Glycine max), 3'ss of exon 5
lower sequence: AT4G16630.1 (Arabidopsis thaliana), 3'ss of exon 5
-----------------tttaaaaattcccactattatcta-gttgattggtaacgcaggtaatgctgattgcctcctttaatatttattgtttaaa----aatggtgt--------------------tttctcatcctagGTGCAAGAGGCTGCTTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATGCTATGTCCGTGGATTTGGATG
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gtatgtatttatctttctctaaggatgtatttgtctgtgtacactatttgatgtttgagaacaagcttattttctctctgagaatcgtttcttaaaatgggaatagcaagattgctaaaatctttaatgtttcttgtgtaagGAGCAAGAGGTGGTTCTGAGGTCTATGCCAGATATTGTTGTGGCGACTCCTGGACGTATGATAGATCATTTGCGTAATTCTATGTCTGTTGATTTGGATG
upper sequence: GLYMA02G25240.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0001g14540.t01 (Vitis vinifera), 3'ss of exon 5
-----tttaaaaattcccactattatctagttgattggtaacgcaggtaatgctgattgcctcctttaatatttattgtttaaaaatggtgttttctcatcctagGTGCAAGAGGCTGCTTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATGCTATGTCCGTGGATTTGGATG
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tttattttgaaagtgttgattgcctcttcatcatataattaacctttttacttgttttgtttgcatcaaaatt-gtta--tggtgatggcacattt--actttagATGCAAGAGACAGCTTTGAGATCAATGCCTGATGTTGTTGTGGCTACCCCGGGACGGATGATAGATCATTTACGCAATTCCATGTCTGTGGATTTGGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254340268|gb|GR858393.1|GR858393EST: GTTGTTGGGGGTCTGTCAACAAAG GTGCAAGAGGCTGCTTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCA
genomic: GTTGTTGGGGGTCTGTCAACAAAGgtttgatcac ... ctcatcctagGTGCAAGAGGCTGCTTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctgattgcctcctttaatatttattgtttaaaaatggtgttttctcatcctagGTGCAAGAGGCTGCTTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATGCTATGTCCGTGGATTTGGATG
tgttttctcatcct CT-rich tract
tttaatatttattgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttaaaaattcccactattatctagttgattggtaacgcaggtaatgctgattgcctcctttaatatttattgtttaaaaatggtgttttctcatcctagGTGCAAGAGGCTGCTTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATGCTATGTCCGTGGATTTGGATG
- - - - ttcccac
- - - - - - - - - - - - - - - - - - - - - -aatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatggtg