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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaatttacctaagcttattctataagaccatagatgcctgagtgttcaagtcttattctgatttgtttcttggaaatggaggcagGGATTTTCAAGTCTGGCCGGGGCACTTCTTGAGAATAACAGTATACGAAATATACATCTCAA

Basic information

species Glycine max
transcript GLYMA02G03410.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03410.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 6
gtatgcaatttacctaagcttattctataagaccatagatgcctgagtg------ttcaagtcttattct----gatttgtttcttggaaatggaggcagGGATTTTCAAGTCTGGCCGGGGCACTTCTTGAGAATAACAGTATACGAAATATACATCTCAA
||||||| || | || | | ||| |||  |  | |    |  |||||         |||    | |||||    |||||   | ||||||||||||| |||||||| ||||||| |  || || |||||||||||||||| |||| ||||||| ||||||||
gtatgcagttgatcttaccatatactaagattctagttgtaactgagccaacagtctcagaattaattctatttgattttcattttggaaatggaggtagGGATTTACAAGTCTTGGTGGAGCGCTTCTTGAGAATAACACTATAAGAAATATTCATCTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagatgcctgagtgttcaagtcttattctgatttgtttcttggaaatggaggcagGGATTTTCAAGTCTGGCCGGGGCACTTCTTGAGAATAACAGTATACGAAATATACATCTCAA
                         ttctgat  putative branch site (score: 3)
                              atttgttt  TA-rich tract