1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatggccccatgcagtggattgattaatttatatagctttttattaaattttactgcttttcttgtcccttcaatggtttcttatagctaatttcgagtagcaattcaaagttcatacgctctaaattattataacgaccgatttatagGTTTGATTTGCGACCTGGAACAAAACCTAAACATGGTGCCGGAGATAAAGATGAGGCACTAGTTGGGTTGTTGTCAAATCTTTCATTGGAAGGATTAAGT
species | Glycine max |
transcript | GLYMA02G00750.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTAGTCCCCGACCCAGATGTTCCCCCAAGTTGTGATGCAGATTCTGTAGA GTTTGATTTGCGACCTGNAACAAAACCTAAACATGGTGCCGGAGATAAAGAEST: gi|254328397|gb|GR835362.1|GR835362
genomic: GTAGTCCCCGACCCAGATGTTCCCCCAAGTTGTGATGCAGATTCTGTAGAgtatggcccc ... cgatttatagGTTTGATTTGCGACCTGGAACAAAACCTAAACATGGTGCCGGAGATAAAGA
EST: GTAGTCCCCGACCCAGATGTTCCCCCAAGTTGTGATGCAGATTCTGTAGA GTTTGATTTGCGACCTGGAACAAAACCTAAACATGGTGCCGGAGATAAAGAEST: gi|192301309|gb|FG989014.1|FG989014
genomic: GTAGTCCCCGACCCAGATGTTCCCCCAAGTTGTGATGCAGATTCTGTAGAgtatggcccc ... cgatttatagGTTTGATTTGCGACCTGGAACAAAACCTAAACATGGTGCCGGAGATAAAGA
EST: GTAGTCCCCGACCCAGATGTTCCCCCAAGTTGTGATGCAGATTCTGTAGA GTTTGATTTGCGACCTGGAACAAAACCTAAACATGGTGCCGGAGATAAAGA
genomic: GTAGTCCCCGACCCAGATGTTCCCCCAAGTTGTGATGCAGATTCTGTAGAgtatggcccc ... cgatttatagGTTTGATTTGCGACCTGGAACAAAACCTAAACATGGTGCCGGAGATAAAGA
cgagtagcaattcaaagttcatacgctctaaattattataacgaccgatttatagGTTTGATTTGCGACCTGGAACAAAACCTAAACATGGTGCCGGAGATAAAGATGAGGCACTAGTTGGGTTGTTGTCAAATCTTTCATTGGAAGGATTAAGT
ttataac putative branch site (score: 2)
tctaaattattataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggccccatgcagtggattgattaatttatatagctttttattaaattttactgcttttcttgtcccttcaatggtttcttatagctaatttcgagtagcaattcaaagttcatacgctctaaattattataacgaccgatttatagGTTTGATTTGCGACCTGGAACAAAACCTAAACATGGTGCCGGAGATAAAGATGAGGCACTAGTTGGGTTGTTGTCAAATCTTTCATTGGAAGGATTAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG