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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatattttggatatcaaatgcctctctattattgctttttttttaccccctacaattccacattactaatactttctgctttgctcttcacagGGGCTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGATTGCTGTCATGATGGGGGAG

Basic information

species Glycine max
transcript GLYMA01G37380.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258430|gb|BE346577.1|BE346577
EST:     CATTTACACCCTATTCTATCCG                         GGGCTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGATTGCTGTCAT
genomic: CATTTACACCCTATTCTATCCGgtacatattt ... ctcttcacagGGGCTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGATTGCTGTCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttaccccctacaattccacattactaatactttctgctttgctcttcacagGGGCTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGATTGCTGTCATGATGGGGGAG
                         tactaat  putative branch site (score: 1)
                                 ctttctgctttgctct  CT-rich tract
                       attactaatacttt  TA-rich tract