1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttaccaattattgtttaaatccaattgatgcttgacatatttttaaaaatctttgcatttttcctagttaaattgacacactgcctttttcatttgttagTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGAT
species | Glycine max |
transcript | GLYMA01G09400.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG TTTTTGTCTATGAAACTTGCTACAGTAAATCCACGGEST: gi|208160240|gb|GD953496.1|GD953496
genomic: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatga ... catttgttagTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGG
EST: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG TTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATAEST: gi|193467285|gb|FK433924.1|FK433924
genomic: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatga ... catttgttagTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATA
EST: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG TTTTTGTCTATGAAACTTGCTACAGTAAATCCACGGCTGGATTTTAATATTEST: gi|208231305|gb|GE033494.1|GE033494
genomic: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatga ... catttgttagTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATT
EST: GCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGTAG TTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGTATTTTAATAEST: gi|207786833|gb|GD759240.1|GD759240
genomic: GCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTG-AGgtatggatga ... catttgttagTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGG-ATTTTAATA
EST: AACGACAGGTTGAG TTTTTGTCTATGAAACTTGCTACAGTAAATCCACGGCTGGATTTTAATATTEST: gi|193500586|gb|FK464089.1|FK464089
genomic: AACGACAGGTTGAGgtatggatga ... catttgttagTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATT
EST: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG TTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATTEST: gi|207712306|gb|GD693770.1|GD693770
genomic: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatga ... catttgttagTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATT
EST: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG TTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATTEST: gi|23734956|gb|BU765737.1|BU765737
genomic: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatga ... catttgttagTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATT
EST: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG TTTTTGTCTATGAAACTTGCAACAGTAEST: gi|208116254|gb|GD914453.1|GD914453
genomic: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatga ... catttgttagTTTTTGTCTATGAAACTTGCAACAGTA
EST: ATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG TTTTTGTCTATGAAACTTGCAACAGTAAATEST: gi|208060930|gb|GD857510.1|GD857510
genomic: ATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatga ... catttgttagTTTTTGTCTATGAAACTTGCAACAGTAAAT
EST: CAACGACAGGTTGAG TTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATTEST: gi|208182235|gb|GD980248.1|GD980248
genomic: CAACGACAGGTTGAGgtatggatga ... catttgttagTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATT
EST: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG TTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATTEST: gi|15203048|gb|BI425816.1|BI425816
genomic: TGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatga ... catttgttagTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATT
EST: CAACGACAGGTTGAG TTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATT
genomic: CAACGACAGGTTGAGgtatggatga ... catttgttagTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATT
aaaatctttgcatttttcctagttaaattgacacactgcctttttcatttgttagTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGAT
aattgac putative branch site (score: 3)
ctgcctttttcattt putative PPT
tttttcatttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaccaattattgtttaaatccaattgatgcttgacatatttttaaaaatctttgcatttttcctagttaaattgacacactgcctttttcatttgttagTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactgcc