1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcccaaatattttatcaccagtggttgtttggtcggtagaattttcgttgctaattgaattctgttggagcttacataaagttgcttcatgttttatcagGTTCAGAAACACTTCCAATGGAATTCGCCCCCAATCAGATTTGATGCTTTCCATTTGGTTATGTATGACCTCTGGTTACGCCATCACACGATCAAATACT
species | Glycine max |
transcript | GLYMA01G02630.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAAATATATCAGATGCTGAGTTTGTTACCCTTCATAATAATTTGGTAAAG GTTCAGAAACACTTCCAATGGAATTCGCCCCCAATCAGANNNGATGCTTTCEST: gi|9983448|gb|BE657556.1|BE657556
genomic: AAAATATATCAGATGCTGAGTTTGTTACCCTTCATAATAATTTGGTAAAGgtataaatat ... gttttatcagGTTCAGAAACACTTCCAATGGAATTCGCCCCCAATCAGATTTGATGCTTTC
EST: AAAATATATCAGATGCTGAGTTTGTTACCCTTCATAATAATTTGGTAAAG GTTCAGAAACACTTCCAATGGAATTCGCCCCCAATCAGATTTGATGCTTTCEST: gi|254319655|gb|GR830787.1|GR830787
genomic: AAAATATATCAGATGCTGAGTTTGTTACCCTTCATAATAATTTGGTAAAGgtataaatat ... gttttatcagGTTCAGAAACACTTCCAATGGAATTCGCCCCCAATCAGATTTGATGCTTTC
EST: AAAATATATCACATGCTGAGTTTGTTACCCTTCATAATAATTTGGTAAAG GTTCAGAAACACTTCCAATGGAATTCGCCCCCAATCAGATTTGATGCTTTCEST: gi|17963174|gb|BM269926.1|BM269926
genomic: AAAATATATCAGATGCTGAGTTTGTTACCCTTCATAATAATTTGGTAAAGgtataaatat ... gttttatcagGTTCAGAAACACTTCCAATGGAATTCGCCCCCAATCAGATTTGATGCTTTC
EST: AAAATATATCAGATGCTGAGTTTGTTACCCTTCATAATAATTTGGTAAAG GTTCAGAAACACTTCCAATGGAATTCGCCCCCAATCAGATTTGATGCTTTCEST: gi|17963123|gb|BM269876.1|BM269876
genomic: AAAATATATCAGATGCTGAGTTTGTTACCCTTCATAATAATTTGGTAAAGgtataaatat ... gttttatcagGTTCAGAAACACTTCCAATGGAATTCGCCCCCAATCAGATTTGATGCTTTC
EST: AAAATATATCAGATGCTGAGTTTGTTACCCTTCATAATAATTTGGTAAAG GTTCAGAAACACTTCCAATGGAATTCGCCCCCAATCAGATTTGATGCT
genomic: AAAATATATCAGATGCTGAGTTTGTTACCCTTCATAATAATTTGGTAAAGgtataaatat ... gttttatcagGTTCAGAAACACTTCCAATGGAATTCGCCCCCAATCAGATTTGATGCT
cgttgctaattgaattctgttggagcttacataaagttgcttcatgttttatcagGTTCAGAAACACTTCCAATGGAATTCGCCCCCAATCAGATTTGATGCTTTCCATTTGGTTATGTATGACCTCTGGTTACGCCATCACACGATCAAATACT
ttttatc CT-rich tract
taattgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcccaaatattttatcaccagtggttgtttggtcggtagaattttcgttgctaattgaattctgttggagcttacataaagttgcttcatgttttatcagGTTCAGAAACACTTCCAATGGAATTCGCCCCCAATCAGATTTGATGCTTTCCATTTGGTTATGTATGACCTCTGGTTACGCCATCACACGATCAAATACT
-cccaaat
- - - - - - -atcacca
- - - - - - - - - - gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttca