1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' | 35 5' 3' | 36 5' 3' | 37 5' 3' | 38 5' 3' | 39 5' 3' | 40 5' 3' |
41 5' 3' | 42 5' 3' | 43 5' 3' | 44 5' 3' | 45 5' 3' | 46 5' 3' | 47 5' 3' | 48 5' 3' | 49 5' 3' | 50 5' 3' | 51 5' 3' | 52 5' 3' | 53 5' 3' |
gtcagtacatgcttgtttatttatccttttgatatactgaaatcttgagattttggctgtgtaatttactagGTCCGGGAGATGGAAAAGAAGAAGGAAGGAAAGCCTGGTGAAGCAAGGGCCAATTTAAGGCGCTCAGTCAGGGAAAATGG
species | Glycine max |
transcript | GLYMA20G32430.1 |
intron # | 40 |
splice site | 3' |
intron type | U2 |
EST: AGCTAACTGATGCTCAGAAGAGCATGTTAGATGATAGATTCAAGTGGAAG GTCCGGGAGATGEST: gi|208101587|gb|GD899548.1|GD899548
genomic: AGCTAACTGATGCTCAGAAGAGCATGTTAGATGATAGATTCAAGTGGAAGgtcagtacat ... aatttactagGTCCGGGAGATG
EST: AGCTAACTGATGCTCAGAAGAGCATGTTAGATGATAGATTCAAGTGGAAG GTCCGGGAGATGGAAAAGAAGAAGGAAGGAAAGCCTGGTGAAGCAAGGGCCEST: gi|208026660|gb|GD823518.1|GD823518
genomic: AGCTAACTGATGCTCAGAAGAGCATGTTAGATGATAGATTCAAGTGGAAGgtcagtacat ... aatttactagGTCCGGGAGATGGAAAAGAAGAAGGAAGGAAAGCCTGGTGAAGCAAGGGCC
EST: AGCTAACTGATGCTCAGAAGAGCATGTTAGATGATAGATTCAAGTGGAAG GTCCGGGAGATGGAAAAGAAGAAGGAAGGAAAGCCTGGTGAAGCAAGGGCCEST: gi|208054440|gb|GD851875.1|GD851875
genomic: AGCTAACTGATGCTCAGAAGAGCATGTTAGATGATAGATTCAAGTGGAAGgtcagtacat ... aatttactagGTCCGGGAGATGGAAAAGAAGAAGGAAGGAAAGCCTGGTGAAGCAAGGGCC
EST: AGCTAACTGATGCTCAGAAGAGCATGTTAGATGATAGATTCAAGTGGAAG GTCCGGGAGAT
genomic: AGCTAACTGATGCTCAGAAGAGCATGTTAGATGATAGATTCAAGTGGAAGgtcagtacat ... aatttactagGTCCGGGAGAT
tatttatccttttgatatactgaaatcttgagattttggctgtgtaatttactagGTCCGGGAGATGGAAAAGAAGAAGGAAGGAAAGCCTGGTGAAGCAAGGGCCAATTTAAGGCGCTCAGTCAGGGAAAATGG
ttttgat putative branch site (score: 4)
ttttgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtacatgcttgtttatttatccttttgatatactgaaatcttgagattttggctgtgtaatttactagGTCCGGGAGATGGAAAAGAAGAAGGAAGGAAAGCCTGGTGAAGCAAGGGCCAATTTAAGGCGCTCAGTCAGGGAAAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG