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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaacttttagtatggattatgtacccgaacctttaatattggttcaaaacttcaaatgttatatgttctcactctataatgcgttgactttcaaagcagAGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTACAGTTTGGTACAAGTAGAGGTTGAAACTAAAACGGCTAAGTCATCATCCA

Basic information

species Glycine max
transcript GLYMA20G34980.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34980.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0049g01330.t01 (Vitis vinifera), 3'ss of exon 3
---acaacttttagtatggat-tatgtacccgaacctttaatattggttcaaaacttcaaatgttatatgttctcactctataatgcgttgactttcaaagcagAGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTACAGTTTGGTACAAGTAGAGGTTGAAACTAAAACGGCTAAGTCATCATCCA
     || ||| | |    || |   |    | |||| |    || |   ||   |   ||  |  |   | || |   | || | | ||   ||     |||||| ||||||  ||| ||||| |||||||||||| ||||||||  | |||||||| ||||| |||| ||||||| | |||| || || ||   ||||||||
ctttgaaatttgactgctaatatgcatgtatgcacctatctggttagacaaattttattaacatc-tggatgctga---tgtagtccttttgtttcacttgcagAGGTTGGAAGATAAATATTCTTCCAATCCAACCGAATTCAACCTCTTGTACAGTATGGTAGAAGTCGAGGTTGCAGCTAAGACTGCAAAAGGATCATCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9898873|gb|BE607841.1|BE607841
EST:     TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCG                         AGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTAC
genomic: TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCGgtaggttttt ... ttcaaagcagAGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTAC
EST: gi|58015415|gb|CX702157.1|CX702157
EST:     TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCG                         AGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTAC
genomic: TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCGgtaggttttt ... ttcaaagcagAGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTAC
EST: gi|192304253|gb|FG993537.1|FG993537
EST:     TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACGTATCG                         AGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTAC
genomic: TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCGgtaggttttt ... ttcaaagcagAGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTAC
EST: gi|58015688|gb|CX702430.1|CX702430
EST:     TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCG                         AGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTAC
genomic: TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCGgtaggttttt ... ttcaaagcagAGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTAC
EST: gi|151400774|gb|EV270588.1|EV270588
EST:     TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCG                         AGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTAC
genomic: TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCGgtaggttttt ... ttcaaagcagAGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaacttcaaatgttatatgttctcactctataatgcgttgactttcaaagcagAGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTACAGTTTGGTACAAGTAGAGGTTGAAACTAAAACGGCTAAGTCATCATCCA
                                           ctttc  CT-rich tract
      ttcaaatgttatat  TA-rich tract