1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...actaataccatagaaaattggaaattaccattgcatttttgtctagtttctccttgattttgagcaatcttattaattttcgttacaatttgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTTCTTTTAGTTGTAAGGATGAAAGCAATGTGGTTAGTGGTGACTCTATCT
species | Glycine max |
transcript | GLYMA20G28720.6 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|6725409|gb|AW309808.1|AW309808
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTTCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTTGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|254342671|gb|GR858833.1|GR858833
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|4396360|gb|AI495357.1|AI495357
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAEST: gi|192323593|gb|FK017114.1|FK017114
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGA
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|24135390|gb|BU925900.1|BU925900
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|151401977|gb|EV271790.1|EV271790
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|192306172|gb|FG996814.1|FG996814
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACGG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|9986799|gb|BE660907.1|BE660907
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTEST: gi|15814658|gb|BI786933.1|BI786933
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
gtttctccttgattttgagcaatcttattaattttcgttacaatttgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTTCTTTTAGTTGTAAGGATGAAAGCAATGTGGTTAGTGGTGACTCTATCT
aatcttattaattttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actaataccatagaaaattggaaattaccattgcatttttgtctagtttctccttgattttgagcaatcttattaattttcgttacaatttgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTTCTTTTAGTTGTAAGGATGAAAGCAATGTGGTTAGTGGTGACTCTATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA