1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatagcagaagtggattccttttaacatcaattttagaaatgttctcttacccctcttcggagtgggagtaccacttaagtttcttctcatcagtactgctcccccttgagacagcagccttccatctttcaatctttttttttttaatacaaaaaatagtaattagtattgaatctcattttatctcagCATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTCGGGAGATGACTCACATGTTTTGAGTGAAGCCAAGGAGGAGGCTGCACGT
species | Glycine max |
transcript | GLYMA20G22090.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGAGAGAGCTCTTTCTTGCTGTCTCTAATATTTTGAAGGAAAATAAAAG CATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTCEST: gi|8827521|gb|BE211251.1|BE211251
genomic: CAGAGAGAGCTCTTTCTTGCTGTCTCTAATATTTTGAAGGAAAATAAAAGgtatagcaga ... tttatctcagCATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTC
EST: CAGAGAGAGCTCTTTCTTGCTGTCTCTAATATTTTGAAGGAAAATAAAAG CATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTCEST: gi|15337560|gb|BI498216.1|BI498216
genomic: CAGAGAGAGCTCTTTCTTGCTGTCTCTAATATTTTGAAGGAAAATAAAAGgtatagcaga ... tttatctcagCATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTC
EST: CAGAGAGAGCTCTTTCTTGCTGTCTCTAATA-TTTGAAGGAAAATAAAAG CATGTCAAAGGATGC-TTTAAGTTCCTGACCAGTTATCTGGC-ACTTTTTCEST: gi|23734414|gb|BU765436.1|BU765436
genomic: CAGAGAGAGCTCTTTCTTGCTGTCTCTAATATTTTGAAGGAAAATAAAAGgtatagcaga ... tttatctcagCATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTC
EST: CAGAGAGAGCTCTTTCTTGCTGTCTCTAATATTTTGAAGGAAAATAAAAG CATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTCEST: gi|192326394|gb|FK015911.1|FK015911
genomic: CAGAGAGAGCTCTTTCTTGCTGTCTCTAATATTTTGAAGGAAAATAAAAGgtatagcaga ... tttatctcagCATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTC
EST: CAGAGAGAGCTCTTTCTTGCTGTCTCTAATATTTTGAAGGAAAATAAAAG CATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTCEST: gi|15202225|gb|BI425289.1|BI425289
genomic: CAGAGAGAGCTCTTTCTTGCTGTCTCTAATATTTTGAAGGAAAATAAAAGgtatagcaga ... tttatctcagCATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTC
EST: CAGAGAGAGCTCTTTCTTGCTGTCTCTAATATTTTGAAGGAAAATAAAAG CATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTCEST: gi|208211806|gb|GE013553.1|GE013553
genomic: CAGAGAGAGCTCTTTCTTGCTGTCTCTAATATTTTGAAGGAAAATAAAAGgtatagcaga ... tttatctcagCATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTC
EST: CAGAGAGAGCTCTTTCTTGCTGTCTCTAATATTTTGAAGGAAAATAAAAG CATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTCEST: gi|192294162|gb|FG986251.1|FG986251
genomic: CAGAGAGAGCTCTTTCTTGCTGTCTCTAATATTTTGAAGGAAAATAAAAGgtatagcaga ... tttatctcagCATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTC
EST: CAGAGAGAGCTCTTTCTTGCTGTCTCTAATATTTTGAAGGAAAATAAAAG CATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTC
genomic: CAGAGAGAGCTCTTTCTTGCTGTCTCTAATATTTTGAAGGAAAATAAAAGgtatagcaga ... tttatctcagCATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTC
tttttttttttaatacaaaaaatagtaattagtattgaatctcattttatctcagCATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTCGGGAGATGACTCACATGTTTTGAGTGAAGCCAAGGAGGAGGCTGCACGT
ttttaat putative branch site (score: 3)
tctcattttatctc putative PPT
ttttttaatacaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagcagaagtggattccttttaacatcaattttagaaatgttctcttacccctcttcggagtgggagtaccacttaagtttcttctcatcagtactgctcccccttgagacagcagccttccatctttcaatctttttttttttaatacaaaaaatagtaattagtattgaatctcattttatctcagCATGTCAAAGGATGCTTTTAAGTTCCTGACCAGTTATCTGGCAACTTTTTCGGGAGATGACTCACATGTTTTGAGTGAAGCCAAGGAGGAGGCTGCACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG