1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tccttttaatcaacaatatttttaacattattgatcaagaatttgtctttaatttatgcaatgctgataaaattaagcactcttgtaatacttttggcagATATCCTGTAACAATTGGCACTGCTATTCCTTTAAAAGCAAGTTTTTTCATTACTTATATAATGGTTGATGGATGGGCCAGTATAGCTGCAGAGGTTTTG
species | Glycine max |
transcript | GLYMA20G16230.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAACAGCATTTCAACAGCTGAGCTCTTTCATTCACCAACCAGCCGACCA ATATCCTGTAACAATTGGCACTGCTATTCCTTTAAAAGCAAGTTTTTTCATEST: gi|192306870|gb|FK003040.1|FK003040
genomic: GGAACAGCATTTCAACAGCTGAGCTCTTTCATTCACCAACCAGCCGACCAgtaagtcatt ... cttttggcagATATCCTGTAACAATTGGCACTGCTATTCCTTTAAAAGCAAGTTTTTTCAT
EST: GGAACAGCATTTCAACAGCTGAGCTCTTTCATTCACCAACCAGCCGACCA ATATCCTGTAACAATTGGCACTGCTATTCCTTTAAAAGCAAGTTTTTTCAT
genomic: GGAACAGCATTTCAACAGCTGAGCTCTTTCATTCACCAACCAGCCGACCAgtaagtcatt ... cttttggcagATATCCTGTAACAATTGGCACTGCTATTCCTTTAAAAGCAAGTTTTTTCAT
tctttaatttatgcaatgctgataaaattaagcactcttgtaatacttttggcagATATCCTGTAACAATTGGCACTGCTATTCCTTTAAAAGCAAGTTTTTTCATTACTTATATAATGGTTGATGGATGGGCCAGTATAGCTGCAGAGGTTTTG
tgctgat putative branch site (score: 3)
tactttt putative PPT
tgataaaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccttttaatcaacaatatttttaacattattgatcaagaatttgtctttaatttatgcaatgctgataaaattaagcactcttgtaatacttttggcagATATCCTGTAACAATTGGCACTGCTATTCCTTTAAAAGCAAGTTTTTTCATTACTTATATAATGGTTGATGGATGGGCCAGTATAGCTGCAGAGGTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG