1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...actatcagtctatcactaatagaagttgatcaacaaagaacaaataaactcgtatattacaaccagttactcaaacgtagtttctggattgtttttgcagACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAACCCAGAGTTCAAGCGGAAGTTGGACCGGATGGTGGAGATAAACGAGAAGA
species | Glycine max |
transcript | GLYMA19G30350.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAG ACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAACEST: gi|208152550|gb|GD950901.1|GD950901
genomic: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAGgttagtttgt ... gtttttgcagACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAAC
EST: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAG ACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAACEST: gi|209715892|gb|BW650905.1|BW650905
genomic: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAGgttagtttgt ... gtttttgcagACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAAC
EST: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAG ACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAACEST: gi|193501039|gb|FK464584.1|FK464584
genomic: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAGgttagtttgt ... gtttttgcagACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAAC
EST: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAG ACAAACCGCACAAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAAEST: gi|151401411|gb|EV271225.1|EV271225
genomic: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAGgttagtttgt ... gtttttgcagACAAACCGCAC-AACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAA
EST: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAG ACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAACEST: gi|209722212|gb|BW675058.1|BW675058
genomic: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAGgttagtttgt ... gtttttgcagACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAAC
EST: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAG ACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAACEST: gi|20811475|gb|BQ295953.1|BQ295953
genomic: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAGgttagtttgt ... gtttttgcagACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAAC
EST: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAG ACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAACEST: gi|151400167|gb|EV269981.1|EV269981
genomic: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAGgttagtttgt ... gtttttgcagACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAAC
EST: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCGTCATCGAG ACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAACEST: gi|192307925|gb|FG998942.1|FG998942
genomic: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAGgttagtttgt ... gtttttgcagACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAAC
EST: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAG ACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAAC
genomic: AAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAGgttagtttgt ... gtttttgcagACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAAC
aaactcgtatattacaaccagttactcaaacgtagtttctggattgtttttgcagACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAACCCAGAGTTCAAGCGGAAGTTGGACCGGATGGTGGAGATAAACGAGAAGA
ttgttttt CT-rich tract
tatattacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actatcagtctatcactaatagaagttgatcaacaaagaacaaataaactcgtatattacaaccagttactcaaacgtagtttctggattgtttttgcagACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAACCCAGAGTTCAAGCGGAAGTTGGACCGGATGGTGGAGATAAACGAGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - atcaaca
- - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcaaac