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gttagcactggatttcttgcactgttttgtcaatactctgtaatggtctcactacataatactctgttggttgatctaaaatgatcattctttgtttccctttttcttccttttagATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTGGATAAAGAGATTTCAGAGCATGAATATTTGAAAAAGAGTGTTGAGGGTT
species | Glycine max |
transcript | GLYMA19G24250.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTGEST: gi|18040428|gb|BM308722.1|BM308722
genomic: AAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTG
EST: TGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTGEST: gi|5688182|gb|AI941197.1|AI941197
genomic: TGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTG
EST: AAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTGEST: gi|298180491|gb|HO022044.1|HO022044
genomic: AAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTG
EST: AAGGTGCTTCTCCCCAACTGTTGGAGGATGTACAGAAGTTTTTACAGCTG ATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGAEST: gi|213594579|gb|DB957998.1|DB957998
genomic: AAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGA
EST: AAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTGEST: gi|213611006|gb|DB970933.1|DB970933
genomic: AAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTG
EST: AAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTGEST: gi|298167590|gb|HO012853.1|HO012853
genomic: AAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTG
EST: AAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTGEST: gi|19053331|gb|BM731998.1|BM731998
genomic: AAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTG
EST: AAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTGEST: gi|254334914|gb|GR844699.1|GR844699
genomic: AAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTG
EST: AAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTG
genomic: AAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTG
ctctgttggttgatctaaaatgatcattctttgtttccctttttcttccttttagATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTGGATAAAGAGATTTCAGAGCATGAATATTTGAAAAAGAGTGTTGAGGGTT
atctaaa putative branch site (score: 3)
tgatcattctttgttt CT-rich tract
atctaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcactggatttcttgcactgttttgtcaatactctgtaatggtctcactacataatactctgttggttgatctaaaatgatcattctttgtttccctttttcttccttttagATCAAATATGTAAGTGGCTCTTATGATTCTGAGGATGGATTTCGCTTGTTGGATAAAGAGATTTCAGAGCATGAATATTTGAAAAAGAGTGTTGAGGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA