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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatactgatccaatttggtaaatttagaagtttagcagctgtttgaactttgaactctcagagaaatttgtttattctattctttgttgcttcagGTGATGGCATTGCTTCAACAAGGAAATCGGAGCAGAACCACAGAACCAACTCGTGCAAACGAAACATCTTCACGCTCCCATGCTATTTTGCAG

Basic information

species Glycine max
transcript GLYMA18G22930.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G22930.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv17s0000g04330.t01 (Vitis vinifera), 3'ss of exon 3
gtaatatactgatccaatttggtaaatttagaagtttagcagctgtttgaact-ttgaactctcagagaaatttgtttattctattctttgttgcttcagGTGATGGCATTGCTTCAACAAGGAAATCGGAGCAGAACCACAGAACCAACTCGTGCAAACGAAACATCTTCACGCTCCCATGCTATTTTGCAG
||||| | || || |  |||  ||   | | |   |    || || ||  ||| ||| | |        | |  ||         | |  ||||   ||||||||||||||||||||||||||||| |  | |||||| || |||||||| ||||  || ||||| |||||||| |||||||||||| |||||
gtaattttcttattcccttt--taggatgaca---tagatagatggttagactgttggatt-------gagtcagtg--------tttgggttgtgacagGTGATGGCATTGCTTCAACAAGGAAACCTAAACAGAACTACTGAACCAACCCGTGTCAATGAAACTTCTTCACGGTCCCATGCTATTCTGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgaactttgaactctcagagaaatttgtttattctattctttgttgcttcagGTGATGGCATTGCTTCAACAAGGAAATCGGAGCAGAACCACAGAACCAACTCGTGCAAACGAAACATCTTCACGCTCCCATGCTATTTTGCAG
                                  ttctattctttgtt  CT-rich tract
                       aaatttgtttattcta  TA-rich tract