1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatatgtcctatttcaatctacatacatacatacatacatacatacatgatctgtatcttattcaggttctaactgttgacatgaactcagGGCGTTTAAGGAAGCCACCAAAGTGGACAAGGTGGTTGTCCTGTGGACTGCCAACACAGAGAGGTATAGCAATTTGGTTGTAGGCCTTAATGACACCATG
species | Glycine max |
transcript | GLYMA18G02210.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTAAGGGCACAAAGCAAGAGCAAGTTCAGCAAATCATCAAAGACATCAA GGCGTTTAAGGAAGCCACCAAAGTGGACAAGGTGGTTGTCCTGTGGACTGCEST: gi|4296509|gb|AI442485.1|AI442485
genomic: ATTAAGGGCACAAAGCAAGAGCAAGTTCAGCAAATCATCAAAGACATCAAgtatatgtcc ... atgaactcagGGCGTTTAAGGAAGCCACCAAAGTGGACAAGGTGGTTGTCCTGTGGACTGC
EST: ATTAAGGGCACAAAGCAAGAGCAAGTTCAGCAAATCATCAAAGACATCAA GGCGTTTAAGGAAGCCACCAAAGTGGACAAGGTGGTTGTCCTGTGGACTGCEST: gi|6667615|gb|AW279066.1|AW279066
genomic: ATTAAGGGCACAAAGCAAGAGCAAGTTCAGCAAATCATCAAAGACATCAAgtatatgtcc ... atgaactcagGGCGTTTAAGGAAGCCACCAAAGTGGACAAGGTGGTTGTCCTGTGGACTGC
EST: ATTAAGGGCACAAAGCAAGAGCAAGTTCAGCAAATCATCAAAGACATCAA GGCGTTTAAGGAAGCCACCAAAGTGGACAAGGTGGTTGTCCTGTGGACTGCEST: gi|120530142|gb|EH258276.1|EH258276
genomic: ATTAAGGGCACAAAGCAAGAGCAAGTTCAGCAAATCATCAAAGACATCAAgtatatgtcc ... atgaactcagGGCGTTTAAGGAAGCCACCAAAGTGGACAAGGTGGTTGTCCTGTGGACTGC
EST: ATTAAGGGCACAAAGCAAGAGCAAGTTCAGCAAATCATCAAAGACATCAA GGCGTTTAAGGAAGCCACCAAAGTGGACAAGGTGGTTGTCCTGTGGACTGC
genomic: ATTAAGGGCACAAAGCAAGAGCAAGTTCAGCAAATCATCAAAGACATCAAgtatatgtcc ... atgaactcagGGCGTTTAAGGAAGCCACCAAAGTGGACAAGGTGGTTGTCCTGTGGACTGC
acatacatacatgatctgtatcttattcaggttctaactgttgacatgaactcagGGCGTTTAAGGAAGCCACCAAAGTGGACAAGGTGGTTGTCCTGTGGACTGCCAACACAGAGAGGTATAGCAATTTGGTTGTAGGCCTTAATGACACCATG
tatcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatgtcctatttcaatctacatacatacatacatacatacatacatgatctgtatcttattcaggttctaactgttgacatgaactcagGGCGTTTAAGGAAGCCACCAAAGTGGACAAGGTGGTTGTCCTGTGGACTGCCAACACAGAGAGGTATAGCAATTTGGTTGTAGGCCTTAATGACACCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG