1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtagctatttaaatgttccctgggtttctcgtctgactgggcagagtagttattttttagtccctggttatgatttcaatgattttgttgaatatgcagGTGAAAAATGTCATAGAAAAGCCCCATAATGATCATCTACCTCTAATAGAAGCCAGCAG
species | Glycine max |
transcript | GLYMA17G00330.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCAAAGTTTAAGCAAACAGCCTCCTGAGAGTCAGGAACTATTGTCCAAA GTGAAAAATGTCATAGAAAAGCCCCATAATGATCATCTACCTCTAATAGAAEST: gi|208218103|gb|GE016121.1|GE016121
genomic: CTCAAAGTTTAAGCAAACAGCCTCCTGAGAGTCAGGAACTATTGTCCAAAgtaaggttta ... gaatatgcagGTGAAAAATGTCATAGAAAAGCCCCATAATGATCATCTACCTCTAATAGAA
EST: CTCAAAGTTTAAGCAAACAGCCTCCTGAGAGTCAGGAACTATTGTCCAAA GTGAAAAATGTCATAGAAAAGCCCCATAATGATCATCTACCTCTAATAGAAEST: gi|151406598|gb|EV276413.1|EV276413
genomic: CTCAAAGTTTAAGCAAACAGCCTCCTGAGAGTCAGGAACTATTGTCCAAAgtaaggttta ... gaatatgcagGTGAAAAATGTCATAGAAAAGCCCCATAATGATCATCTACCTCTAATAGAA
EST: CTCAAAGTTTAAGCAAACAGCCTCCTGAGAGTCAGGAACTATTGTCCAAA GTGAAAAATGTCATAGAAAAGCCCCATAATGATCATCTACCTCTAATAGAAEST: gi|31469370|gb|CD411398.1|CD411398
genomic: CTCAAAGTTTAAGCAAACAGCCTCCTGAGAGTCAGGAACTATTGTCCAAAgtaaggttta ... gaatatgcagGTGAAAAATGTCATAGAAAAGCCCCATAATGATCATCTACCTCTAATAGAA
EST: CTCTAAGTTTAAGCCAACAGCCTCCTGAGAGTCAGGAACTATTGTCCAAA GTGAAAAATGTCATAGAAAAGCCCCATAATGATCATCTACCTCTTATAGAAEST: gi|192321563|gb|FK011793.1|FK011793
genomic: CTCAAAGTTTAAGCAAACAGCCTCCTGAGAGTCAGGAACTATTGTCCAAAgtaaggttta ... gaatatgcagGTGAAAAATGTCATAGAAAAGCCCCATAATGATCATCTACCTCTAATAGAA
EST: CTCAAAGTTTAAGCAAACAGCCTCCTGAGAGTCAG-AACTATTGTCCAAA GTGAAAA-TGTCATAGAAAAGCCCCATAATGATCATCTACCTCTAATAGAA
genomic: CTCAAAGTTTAAGCAAACAGCCTCCTGAGAGTCAGGAACTATTGTCCAAAgtaaggttta ... gaatatgcagGTGAAAAATGTCATAGAAAAGCCCCATAATGATCATCTACCTCTAATAGAA
agtagttattttttagtccctggttatgatttcaatgattttgttgaatatgcagGTGAAAAATGTCATAGAAAAGCCCCATAATGATCATCTACCTCTAATAGAAGCCAGCAG
atttcaatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagctatttaaatgttccctgggtttctcgtctgactgggcagagtagttattttttagtccctggttatgatttcaatgattttgttgaatatgcagGTGAAAAATGTCATAGAAAAGCCCCATAATGATCATCTACCTCTAATAGAAGCCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - ttccctg
- - - - - - - - - - - - - - - - -ctgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttatg