Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtaatttgtttctaccttctgcatatgtgaataacaaaatgtgttacatgtgtaatatttggcattacgtgtgcctttctggtaacttgttagGAGCACAGTTTCAAAAGTGTATCCTGCCATGTATATAGACAATGCTACTGAGCTTGCATTTGATGATGTCACTCCCGAGGACCCTGATTTTTCTTCCATT

Basic information

species Glycine max
transcript GLYMA16G30160.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G30160.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G077222_T01 (Zea mays), 3'ss of exon 4
----------------------------------------------------------------------------------------------------gta-gtaatttgtttctaccttctgcatatgtgaataacaaaatgtgttacatgtgtaata--tttggcattacgtgtgcctttctggtaacttgttagGAGCACAGTTTCAAAAGTGTATCCTGCCATGTATATAGACAATGCTACTGAGCTTGCATTTGATGATGTCACTCCCGAGGACCCTGATTTTTCTTCCATT
                                                                                                     || ||     ||   | |||  ||| | |   | |  ||   |   |  | |  || ||   | ||  |       |    |  ||||  |     |||| |||  | |||||||||||||| || |||||||| || ||||  ||||| ||||||||||| |||||||| || || || ||||||||| | | ||| 
gtgcatatctattattcctttgtatcagtagacctcccaagtgtttgttgcaaatatgcagtatggtcccatttctcttttgtcctatttcatattcttcatacgtttaaggtcattgcctcttgc-tgttaaattttcagttttgctctcttaggtgattattctgttaaccaacttattctcgtggtttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATA

upper sequence: GLYMA16G30160.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G140874_T01 (Zea mays), 3'ss of exon 1
----------------------------------------------------------------------------------------------------gta-gtaatttgtttctaccttctgcatatgtgaataacaaaatgtgttacatgtgtaatatttggcattacgtgtgcctttctggtaacttgt---tagGAGCACAGTTTCAAAAGTGTATCCTGCCATGTATATAGACAATGCTACTGAGCTTGCATTTGATGATGTCACTCCCGAGGACCCTGATTTTTCTTCCATT
                                                                                                     || ||     ||   | |||  ||| | |   | |  ||   |   |  | |  || ||  ||    |||         |||| ||   ||      |||| |||  | |||||||||||||  || |||||||| || ||||  ||||| ||||||||||| |||||||| || || || ||||||||| | | ||| 
gtgcatatctattattcctttgtatcagtagacctcccaagtgtttgttgcaaatatgcagtatggtcccatttctcttttgtcatatttcatattcttcatacgtttaaggtcattgcctcttgc-tgtcaaattttcagttttgctctcttaggtgattattc-tgttaaccaccttattctcgtggtttccatacagGAACACTTTCTCAAAAGTGTATCTAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATA

upper sequence: GLYMA16G30160.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G23890.1 (Arabidopsis thaliana), 3'ss of exon 4
--gtagtaatttgtttctaccttctgcatatgtgaataacaaaatgtgttacatgtgtaatatttggcattacgtgtgcctttctgg--------taacttgtt--agGAGCACAGTTTCAAAAGTGTATCCTGCCATGTATATAGACAATGCTACTGAGCTTGCATTTGATGATGTCACTCCCGAGGACCCTGATTTTTCTTCCATT
   || |    || || |   |  ||  | ||       |||||| |  | | | |||| ||    |    |    ||| ||| ||         |||||  ||  || | ||||   ||||||||||||||||| |||||||| || |||| |||||||||||| ||||||||| | |||||||| |||||||||||||||||||||
gtatactttcatgattttgt-tagtgtttctggtggggtcaaaatatccttcgtatgtattagaaagtgaaattcatgcatttatgtgtgttctttaactctttgcagAAACACAACCTCAAAAGTGTATCCTGCTATGTATATTGAGAATGTTACTGAGCTTGCTTTTGATGATATTACTCCCGAAGACCCTGATTTTTCTTCCATT

upper sequence: GLYMA16G30160.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G52410.1 (Arabidopsis thaliana), 3'ss of exon 5
gtagtaatttgtttctaccttctgcatatgtgaataacaaaatgtgttacatgtgtaatatttggcattacgtgtgcctttctggtaacttgttagGAGCACAGTTTCAAAAGTGTATCCTGCCATGTATATAGACAATGCTACTGAGCTTGCATTTGATGATGTCACTCCCGAGGACCCTGATTTTTCTTCCATT
|||   ||       |  |||    |    ||||    | | ||||  | || |  | |   |  ||    |      | |    |   |   ||||| | |||  |||||||| |||||||||||||||||||| |||| |||||| ||||||||||||||| | || || || || ||||||||| | | ||||
gtaactatcaaaaaatctctttcctactcttgaa----acattgtgaaatat-ttcactgccttacaacgtgaaaatatcttcattggtta--tagGAACTCAGCATCAAAAGTATATCCTGCCATGTATATAGAAAATGTTACTGAACTTGCATTTGATGATATTACACCTGAAGATCCTGATTTTCCATTCATT

upper sequence: GLYMA16G30160.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv16s0050g00600.t01 (Vitis vinifera), 3'ss of exon 5
------gtagtaatttgtttctaccttctgcatatgtgaataacaaaatgtgttacatgtgtaatatttggcattacgtgtgcctttctggtaacttgttagGAGCACAGTTTCAAAAGTGTATCCTGCCATGTATATAGACAATGCTACTGAGCTTGCATTTGATGATGTCACTCCCGAGGACCCTGATTTTTCTTCCATT
       | |||   ||  ||  | |        |   || |  ||      ||  ||||  |  |  ||  ||||    |  || ||   |  | |  |||||  ||||||||||| || ||||| || ||||| ||||  |||  |||||| ||||||||||||||| | || || || |||||||||||||| ||||||
ctgtagcttgtagagtgcatcagcatctgaaggctaccaacataaattcacattggatgttgataacatgtgattaataatttctatccatt--ccttgtagGAATACAGTTTCAAAGGTATATCCAGCTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgttacatgtgtaatatttggcattacgtgtgcctttctggtaacttgttagGAGCACAGTTTCAAAAGTGTATCCTGCCATGTATATAGACAATGCTACTGAGCTTGCATTTGATGATGTCACTCCCGAGGACCCTGATTTTTCTTCCATT
                                         tggtaac  putative branch site (score: 2)
            tgtaatattt  TA-rich tract