1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcttgttaaggtttgtttccctttgtatttcacaacctcccttacccccaaccatactccagaaggagcttaccttaatagctatgattattttgggcagGCAATAAGTAATCTGAAAGCGAATGCAGCTGGATTAACTCAGCATAACAATGCAAAGCCTGTTGCTGATTCCAGCTTTTCCAAGGCTAAACCAGAACATT
species | Glycine max |
transcript | GLYMA16G28350.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTCTGAGTCTTTATGGGATGCACACCAAGTTTCTCGTAAGCATCGTGAG GCAATAAGTAATCTGAAAGCGAATGCAGCTGGATTAACTCAGCATAACAATEST: gi|6455582|gb|AW186265.1|AW186265
genomic: AGTCTGAGTCTTTATGGGATGCACACCAAGTTTCTCGTAAGCATCGTGAGgtgatgatat ... ttttgggcagGCAATAAGTAATCTGAAAGCGAATGCAGCTGGATTAACTCAGCATAACAAT
EST: AGTCTGAGTCTTTATGGGATGCACACCAAGTTTCTCGTAAGCATCGTGAG GCAATAAGTAATCTGAAAGCGAATGCAGCTGGATTAACTCAGCATAACAATEST: gi|213602893|gb|DB972467.1|DB972467
genomic: AGTCTGAGTCTTTATGGGATGCACACCAAGTTTCTCGTAAGCATCGTGAGgtgatgatat ... ttttgggcagGCAATAAGTAATCTGAAAGCGAATGCAGCTGGATTAACTCAGCATAACAAT
EST: AGTCTGAGTCTTTATGGGATGCACACCAAGTTTCTCGTAAGCATCGTAAG GCAATAAGTAATCEST: gi|298192637|gb|HO033071.1|HO033071
genomic: AGTCTGAGTCTTTATGGGATGCACACCAAGTTTCTCGTAAGCATCGTGAGgtgatgatat ... ttttgggcagGCAATAAGTAATC
EST: AGTCTGAGTCTTTATGGGATGCACACCAAGTTTCTCGTAAGCATCGTGAG GCAATAAGTAATCTGAAAGCGAATGCAGCTGGATTAACTCAGCATAACAGT
genomic: AGTCTGAGTCTTTATGGGATGCACACCAAGTTTCTCGTAAGCATCGTGAGgtgatgatat ... ttttgggcagGCAATAAGTAATCTGAAAGCGAATGCAGCTGGATTAACTCAGCATAACAAT
ccccaaccatactccagaaggagcttaccttaatagctatgattattttgggcagGCAATAAGTAATCTGAAAGCGAATGCAGCTGGATTAACTCAGCATAACAATGCAAAGCCTGTTGCTGATTCCAGCTTTTCCAAGGCTAAACCAGAACATT
ttatttt CT-rich tract
tatgattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgttaaggtttgtttccctttgtatttcacaacctcccttacccccaaccatactccagaaggagcttaccttaatagctatgattattttgggcagGCAATAAGTAATCTGAAAGCGAATGCAGCTGGATTAACTCAGCATAACAATGCAAAGCCTGTTGCTGATTCCAGCTTTTCCAAGGCTAAACCAGAACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT