1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaggatgagtagttttagattttacataatgtaggctggaagaaatttagttatatcgtttttggttgatttactttgttatactaaatggtacatacccttcttttaccatttatttatattcctctttattcagGTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCTAATGCCACCATCATCATG
species | Glycine max |
transcript | GLYMA16G23710.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACAAATGAAAATGGAGAAATTGTCAAGGGAGTCTGCTCAAATTTCTTGT GTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAAAGEST: gi|16281497|gb|BI944518.1|BI944518
genomic: CACAAATGAAAATGGAGAAATTGTCAAGGGAGTCTGCTCAAATTTCTTGTgtaaggatga ... ctttattcagGTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAAAG
EST: TGCTCAAATTTCTTGT GTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAAAGEST: gi|213610723|gb|DB961198.1|DB961198
genomic: TGCTCAAATTTCTTGTgtaaggatga ... ctttattcagGTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAAAG
EST: CACAAATGAAAATGGAGAAATTGTCAAGGGAGTCTGCTCAAATTTCTTGT GTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGEST: gi|120532662|gb|EH260795.1|EH260795
genomic: CACAAATGAAAATGGAGAAATTGTCAAGGGAGTCTGCTCAAATTTCTTGTgtaaggatga ... ctttattcagGTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTG
EST: CACAAATGAAAATGGAGAAATTGTCAAGGGAGTCTGCTCAAATTTCTTGT GTGACCTTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAAAEST: gi|213611575|gb|DB960855.1|DB960855
genomic: CACAAATGAAAATGGAGAAATTGTCAAGGGAGTCTGCTCAAATTTCTTGTgtaaggatga ... ctttattcagGTGACCT-GAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAAA
EST: CACAAATGAAAATGGAGAAATTGTCAAGGGAGTCTGCTCAAATTTCTTGT GTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGEST: gi|213592264|gb|DB965999.1|DB965999
genomic: CACAAATGAAAATGGAGAAATTGTCAAGGGAGTCTGCTCAAATTTCTTGTgtaaggatga ... ctttattcagGTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTG
EST: CACAAATGAAAATGGAGAAATTGTCAAGGGAGTCTGCTCAAATTTCTTGT GTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAAEST: gi|192296690|gb|FG991258.1|FG991258
genomic: CACAAATGAAAATGGAGAAATTGTCAAGGGAGTCTGCTCAAATTTCTTGTgtaaggatga ... ctttattcagGTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAA
EST: CACAAATGAAAATGGAGAAATTGTCAAGGGAGTCTGCTCAAATTTCTTGT GTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAAAGEST: gi|13480735|gb|BG510078.1|BG510078
genomic: CACAAATGAAAATGGAGAAATTGTCAAGGGAGTCTGCTCAAATTTCTTGTgtaaggatga ... ctttattcagGTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAAAG
EST: CACAAATGAAAATGGAGAAATTGTCAAGGGAGTCTGCTCAAATTTCTTGT GTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGGTGGGAAAG
genomic: CACAAATGAAAATGGAGAAATTGTCAAGGGAGTCTGCTCAAATTTCTTGTgtaaggatga ... ctttattcagGTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAAAG
tactaaatggtacatacccttcttttaccatttatttatattcctctttattcagGTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCTAATGCCACCATCATCATG
tactaaa putative branch site (score: 1)
tttatattcctcttt putative PPT
ttcttttaccatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggatgagtagttttagattttacataatgtaggctggaagaaatttagttatatcgtttttggttgatttactttgttatactaaatggtacatacccttcttttaccatttatttatattcctctttattcagGTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCTAATGCCACCATCATCATG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA