1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aagtagatgaacaactgaattcatttatgttattaaaattttcaaattctccacattgcattatttcagcaccttagctattgcattattcatgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAA
species | Glycine max |
transcript | GLYMA16G13410.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATEST: gi|254328508|gb|GR835473.1|GR835473
genomic: GTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCAT
EST: GTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAG-CTATCAEST: gi|254328051|gb|GR835016.1|GR835016
genomic: GTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAA-GGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCA
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATEST: gi|7795796|gb|AW781193.1|AW781193
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAAGAGGTTTTATTCTTAGATTATGAGATTGCCTTCAATGAGEST: gi|254328509|gb|GR835474.1|GR835474
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAG
EST: AGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTTCAATGAGGCTATCAEST: gi|254328052|gb|GR835017.1|GR835017
genomic: AGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCC-TTCAATGAGGCTATCA
EST: ATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGG-TTTA-TCTTAGATAATGAGATTGCCTTCAATGAGGCTATCAT
genomic: ATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCAT
attctccacattgcattatttcagcaccttagctattgcattattcatgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAA
attatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtagatgaacaactgaattcatttatgttattaaaattttcaaattctccacattgcattatttcagcaccttagctattgcattattcatgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - -caactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcacct