Sequence
atgc intronic sequence ATGC exonic sequencegtaagtaactctagagaatgtttgtacttgaattcatgtccacatttcattaagagggttattaggcagaattattatggtcttgtactttcagctatacatttgttttctcatgctcaaggtcatgagattgatgctaacatcataatgtgtttatactgacagGCAAGGCACATGGTCATCCCCTATATGCCAATGTTGGTGCCACCTATAAACTGGACAGG
Basic information
species | Glycine max |
transcript | GLYMA16G13080.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G13080.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0010g00690.t01 (Vitis vinifera), 3'ss of exon 4
gtaagtaactctagagaatgtttgtacttgaattcatgtccacatttcattaagagggttattaggcagaattattatggtcttgtactttcagctatacatttgttttctcatgctcaaggtcatgagattgatgctaacatcataatg---tgtttatactgacagGCAAGGCACATGGTCATCCCCTATATGCCAATGTTGGTGCCACCTATAAACTGGACAGG
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---------------------------gtgagtcaatacaaagttttca--ggatgtcttgttttgcatattttt--tggtgttgtgtgtgtgtgtgtttattaaggtaggtaagcctcagattttgaggttcaggcaaggatgataataatttttctgtcaaaacagGCTAGGCACATGGTTATTCCTTATATGCCAATGTTGGTGCCTCCACTAAACTGGACAGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208326332|gb|GE120714.1|GE120714EST: ATGGTGTCATTGAATGTGATCCTCTGGTGCAAAATGGCCTTGAAAAGTCT GCAAGGCACATGGTCATCCCCTATATGCCAATGTTGGTGCCACCTATAAAC
genomic: ATGGTGTTATTGAATGTGATCCTCTGGTGCAAAATGGCCTTGAAAAGTCTgtaagtaact ... atactgacagGCAAGGCACATGGTCATCCCCTATATGCCAATGTTGGTGCCACCTATAAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatgctcaaggtcatgagattgatgctaacatcataatgtgtttatactgacagGCAAGGCACATGGTCATCCCCTATATGCCAATGTTGGTGCCACCTATAAACTGGACAGG
tgctaac putative branch site (score: 1)
ataatgtgtttata TA-rich tract