1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttgtgcacatcttgcactgtatggaatactaactcattttttttacatccatttattaaaatagtttgacttctacaatgttaattccatttttaccagGTTAGTTGGGTAAAGAAGGTCAATTTGATATTTCTTTTCTTCCTCCTGAGGAAGCTTATCCTGCCATTTTATTCATTCACGCTATTCTGCATCATTCTTC
species | Glycine max |
transcript | GLYMA16G10680.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCCAATGCAATTGTTTCGCTTGTGTTTTCTTGATATACTTCGTTCAAAG GTTAGTTGGGTAAAGAAGGTCAATTTGATATTTCTTTTCTTCCTCCTGAGGEST: gi|23728858|gb|BU762498.1|BU762498
genomic: GTCCAATGCAATTGTTTCGCTTGTGTTTTCTTGATATACTTCGTTCAAAGgtattgaatt ... tttttaccagGTTAGTTGGGTAAAGAAGGTCAATTTGATATTTCTTTTCTTCCTCCTGAGG
EST: GTCCAATGCAATTGTTTCGCTTGTGTTTTCTTGATATACTTCGTTCAAAG GTTAGTTGGGTAAAGAAGGTCAATTTGATATTTCTTTTCTTCCTCCTGAGGEST: gi|11687350|gb|BF594990.1|BF594990
genomic: GTCCAATGCAATTGTTTCGCTTGTGTTTTCTTGATATACTTCGTTCAAAGgtattgaatt ... tttttaccagGTTAGTTGGGTAAAGAAGGTCAATTTGATATTTCTTTTCTTCCTCCTGAGG
EST: GTCCAATGCAATTGTTTCGCTTGTGTTTTCTTGATATACTTCGTTCAAAG GTTAGTTGGGTAAAGAAGGTCAATTTGATATTTCTTTTCTTCCTCCTGAGG
genomic: GTCCAATGCAATTGTTTCGCTTGTGTTTTCTTGATATACTTCGTTCAAAGgtattgaatt ... tttttaccagGTTAGTTGGGTAAAGAAGGTCAATTTGATATTTCTTTTCTTCCTCCTGAGG
acatccatttattaaaatagtttgacttctacaatgttaattccatttttaccagGTTAGTTGGGTAAAGAAGGTCAATTTGATATTTCTTTTCTTCCTCCTGAGGAAGCTTATCCTGCCATTTTATTCATTCACGCTATTCTGCATCATTCTTC
tgttaat putative branch site (score: 3)
ttccattttt CT-rich tract
atttattaaaatagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtgcacatcttgcactgtatggaatactaactcattttttttacatccatttattaaaatagtttgacttctacaatgttaattccatttttaccagGTTAGTTGGGTAAAGAAGGTCAATTTGATATTTCTTTTCTTCCTCCTGAGGAAGCTTATCCTGCCATTTTATTCATTCACGCTATTCTGCATCATTCTTC
- - tgcacat
- - - - - -cttgcac
- - - - - - - - - tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - -ccattta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctac