1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gatgatcttttctgagatattaacagtgattttatcctttttttttttaatttcatttcaaatgtctgatgattctcctattgtttgtgatcataataagGCTTTGGATCTTGGAAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCTTGAGTGGGAGCGATCAT
species | Glycine max |
transcript | GLYMA16G09930.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATTGCTACAGAGACAAGAATCTGCCAAGGGAATCAAAGAATTGGAGAAG GCTTTGGATCTTGGAAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAEST: gi|21601805|gb|BQ612136.1|BQ612136
genomic: CATTGCTACAGAGACAAGAATCTGCCAAGGGAATCAAAGAATTGGAGAAGgtttgttgac ... tcataataagGCTTTGGATCTTGGAAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAA
EST: CATTGCTACAGAGACAAGAATCTGCCAAGGGAATCAAAGAATTGGAGAAG GCTTTGGATCTTGGAAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAEST: gi|192306553|gb|FG996229.1|FG996229
genomic: CATTGCTACAGAGACAAGAATCTGCCAAGGGAATCAAAGAATTGGAGAAGgtttgttgac ... tcataataagGCTTTGGATCTTGGAAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAA
EST: ATCTGCCAAGGGAATCAAAGAATTGGAGAAG GCTTTGGATCTTGGAAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAA
genomic: ATCTGCCAAGGGAATCAAAGAATTGGAGAAGgtttgttgac ... tcataataagGCTTTGGATCTTGGAAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAA
tttaatttcatttcaaatgtctgatgattctcctattgtttgtgatcataataagGCTTTGGATCTTGGAAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCTTGAGTGGGAGCGATCAT
atcataataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgatcttttctgagatattaacagtgattttatcctttttttttttaatttcatttcaaatgtctgatgattctcctattgtttgtgatcataataagGCTTTGGATCTTGGAAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCTTGAGTGGGAGCGATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - -ttctgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt