1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggcactaccaaaccctaatgaacatatcattttgatttttgtcattacaatctttttttctcaaagataaaataaatattctctttcttgatgttaattagTCGTCCTCCCAGGCTGAAGATAAGAAATTTGAAACAAATTTTGAGTCAGGTTTTGTACTCACTTCAGAGCACCTAAG
species | Glycine max |
transcript | GLYMA16G09690.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTCTCCTGAAATGATGACCTACCATAAAGCTATAGATGTTCTTAGAAAG TCGTCCTCCCAGGCTGAAGATAAGAAATTTGAAACAAATTTTGAGTCAGGTEST: gi|192310197|gb|FK002581.1|FK002581
genomic: GTTCTCCTGAAATGATGACCTACCATAAAGCTATAGATGTTCTTAGAAAGgtaggcacta ... tgttaattagTCGTCCTCCCAGGCTGAAGATAAGAAATTTGAAACAAATTTTGAGTCAGGT
EST: GTTCTCCTGAAATGATGACCTACCATAAAGCTATAGATGTTCTTAGAAAG TCGTCCTCCCAGGCTGAAGATAAGAAATTTGAAACAAATTTTGAGTCAGGT
genomic: GTTCTCCTGAAATGATGACCTACCATAAAGCTATAGATGTTCTTAGAAAGgtaggcacta ... tgttaattagTCGTCCTCCCAGGCTGAAGATAAGAAATTTGAAACAAATTTTGAGTCAGGT
acaatctttttttctcaaagataaaataaatattctctttcttgatgttaattagTCGTCCTCCCAGGCTGAAGATAAGAAATTTGAAACAAATTTTGAGTCAGGTTTTGTACTCACTTCAGAGCACCTAAG
tcttgat putative branch site (score: 4)
ttctctttcttgat CT-rich tract
tttttttctcaaagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcactaccaaaccctaatgaacatatcattttgatttttgtcattacaatctttttttctcaaagataaaataaatattctctttcttgatgttaattagTCGTCCTCCCAGGCTGAAGATAAGAAATTTGAAACAAATTTTGAGTCAGGTTTTGTACTCACTTCAGAGCACCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA