Sequence
atgc intronic sequence ATGC exonic sequencegtaaacttgtttgctgattattagtttacccctttgttgttgagttgctgaagaaatttagtacctaactgtatcatgatttgacatttttacaccttgaaattcagtgatggatcatgtacctttattgtgcagGTTATAAATTTGTACCTGGAATTGCTTAAGGAGAGGGAGCAAAGAGAACCACTGAAATTTCTGAAATGTCATTTTTTCAATACCTTTTTCTACAAAAAG
Basic information
| species | Glycine max |
| transcript | GLYMA15G15890.1 |
| intron # | 4 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G15890.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os03g29630.1 (Oryza sativa), 3'ss of exon 3
----gta-aacttgtttgctgattattagtttacccctttgttgttgagttgctgaagaaatttagtacctaactgtatcatgatttgacatttttacaccttg-aaattcagtgatggatca----tgtacctttattg--tgcagGTTATAAATTTGTACCTGGAATTGCTTAAGGAGAGGGAGCAAAGAGAACCACTGAAATTTCTGAAATGTCATTTTTTCAATACCTTTTTCTACAAAAAG
|| | ||| || | | | |||| | || | || | | | || || || || | ||| | | | | | || || |||| | ||| ||| || ||||||| || ||||||||||| |||||| | |||||||||| ||||||||||||| | |||| ||||||| || || |||||||| || || || || |||
gtgaatacggcctgtccatggaaggaatcctgaagaatatgttaaacaaatgtcccattctttctgatcttgacatta--gtggttccat-tttccatgcttcacagaaccaagactgcatcagcattctacttttgttccttgcagGTCATTAATTTGTACCTTGAATTGTTAAAGGAGAGGGCGCAAAGAGAACCAAAAAGATTTTTGAAATGCCACTTCTTCAATACATTCTTTTATAAGAAG
upper sequence: GLYMA15G15890.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g25370.3 (Oryza sativa), 3'ss of exon 3
gtaaacttgtttgctgattattagtttacccctttgttgttgagttgctgaagaaatttagtaccta-actgtatcatgatttgacatttttacaccttgaaattcagtgatggat-catgtacctttat-tgtgcagGTTATAAATTTGTACCTGGAATTGCTTAAGGAGAGGGAGCAAAGAGAACCACTGAAATTTCTGAAATGTCATTTTTTCAATACCTTTTTCTACAAAAAG
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----------------------------------------------------gtattttattgcttgtgctgttttcttctgtttgaactcaaaaggtgagcatatgggatttgacatgagctccttgacattttcagGTCATAAATTTGTATCTTGAGCTGCTGAAAGAGAGGGAACTGAGAGAACCTAACAAGTTTTTGAAATGCCACTTCTTCAATACCTTTTTCTACAAAAAG
upper sequence: GLYMA15G15890.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G012601_T02 (Zea mays), 3'ss of exon 3
gtaaacttgtttgctgattattagtttacccctttgttgttgagttgctgaagaaatttagtacctaactgtatcatgatttgacatttttacaccttgaaattcagtgatggatcatgtacctttattgtgcagGTTATAAATTTGTACCTGGAATTGCTTAAGGAGAGGGAGCAAAGAGAACCACTGAAATTTCTGAAATGTCATTTTTTCAATACCTTTTTCTACAAAAAG
| || | | ||| ||| | |||| || ||||| | || || || || | | | | | ||| | | || | || || |||||||| |||||||| || || ||||||| |||||||| | ||||||||| | || || | ||||| ||||| ||||| |||||||||||||| |||
-------------gtatttttcattttgttgcttctgtaactctttgcggag------tagtaagcatacataatgcaatatgtcagtataaaattct----ttctattttttttcttccgactacttt---cagGTTATCAATTTGTATCTTGATCTGCTTAAAGAGAGGGAACTAAGAGAACCTCGCAAGTTCTTAAAATGCCATTTCTTCAACACCTTTTTCTACAAGAAG
upper sequence: GLYMA15G15890.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G06910.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaaacttgtttgctgattattagtttacccctttgttgttgagttgctgaagaaatttagtacctaactgtatcatgatttgacatttttacaccttgaaattcagtgatggatcatgtacctt-tattgtgcagGTTATAAATTTGTACCTGGAATTGCTTAAGGAGAGGGAGCAAAGAGAACCACTGAAATTTCTGAAATGTCATTTTTTCAATACCTTTTTCTACAAAAAG
||||| || | | | | | || | |||| | | | || | || | || | | ||| || | | | || || || | | || |||| || ||| | || ||| |||||| || || ||||| ||||||||| ||| ||||| |||||||||||||||||||| ||||||| || |||
-------------------gttagtcgacgcatctaaatctcacgtgatttctt--cttagagattgaatataattttcttgtctaattaggacctctatgatttggtaa-aaaccttggactttgttctatgtagGTCATTAATCTTTATATGGTATTGCTGAAAGAAAGGGAAGCTAGAGAACCAAAGAAGTTTCTTAAATGTCATTTTTTCAATACATTTTTCTTCACTAAG
upper sequence: GLYMA15G15890.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ28303 (Selaginella moellendorffii), 3'ss of exon 2
gtaaacttgtttgctgattattagtttacccctttgttgttgagttgctgaagaaatttagtacctaactgtatcatgatttgacatttttacaccttgaaattcagtgatggat-catgtacctttattgtgcagGTTATAAATTTGTACCTGGAATTGCTTAAGGAGAGGGAGCAAAGAGAACCACTGAAATTTCTGAAATGTCATTTTTTCAATACCTTTTTCTACAAAAAG
| ||| ||| | |||| || ||||| || | || || ||||| | ||||| || ||||||||| |||||||||| |||||||||||| |||| || |||||| || |||||||| |||||||| || |||||||| ||
------------------------------------------------------------------------gtaatg--ttgctactttttagttttc---ttcagcactgtttacaagttgctttaata-acagGTGATCAATTTGTACATGGAATTGCTGAAGGAGAGGGAGATTCGAGAGCCCAAAAAATTTTTGCGGTGTCATTTCTTCAATACTTTCTTCTACAACAAA
upper sequence: GLYMA15G15890.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ20326 (Selaginella moellendorffii), 3'ss of exon 2
gtaaacttgtttgctgattattagtttacccctttgttgttgagttgctgaagaaatttagtacctaactgtatcatgatttgacatttttacaccttgaaattcagtgatggat-catgtacctttattgtgcagGTTATAAATTTGTACCTGGAATTGCTTAAGGAGAGGGAGCAAAGAGAACCACTGAAATTTCTGAAATGTCATTTTTTCAATACCTTTTTCTACAAAAAG
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------------------------------------------------------------------------gtaatg--ttgctactttttcgttttc---ttcagcactgtttacaagttgctttaata-acagGTGATCAATTTGTACATGGAATTGCTGAAGGAGAGGGAGATTCGAGAGCCCAAAAAATTTTTGCGGTGTCATTTCTTCAATACTTTCTTCTACAACAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16996250|gb|BM085622.1|BM085622EST: CGGGAGAGAAGTTTCAGTGCCTTAGACCGGCTGGATGGTTAAATGATGAG GTTATAAATTTGTACCTGGAATTGCTTAAGGAGAGGGAGCAAAGAGAACCA
genomic: CGGGAGAGAAGTTTCAGTGCCTTAGACCGGCTGGATGGTTAAATGATGAGgtaaacttgt ... tattgtgcagGTTATAAATTTGTACCTGGAATTGCTTAAGGAGAGGGAGCAAAGAGAACCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgacatttttacaccttgaaattcagtgatggatcatgtacctttattgtgcagGTTATAAATTTGTACCTGGAATTGCTTAAGGAGAGGGAGCAAAGAGAACCACTGAAATTTCTGAAATGTCATTTTTTCAATACCTTTTTCTACAAAAAG
atttgac putative branch site (score: 4)
cctttatt putative PPT
atttttaca TA-rich tract
