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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagattgagaatagttatcagaatctgactgaaatagttgattttgtcttttcaaatttaatttaggtacttgtcacatggaattttttgtgtagGTTTGATAAAGACCCTGCGAGCAATAAATGGCACCTCTTGGCATGACACTTTTTTAGGCCTTTGGTTAGCAACTCTTCGTCTTGTTCAGAGG

Basic information

species Glycine max
transcript GLYMA15G10970.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10970.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0020g02570.t01 (Vitis vinifera), 3'ss of exon 4
gtgagattgagaatagttatcagaatctgactgaaatagttgatt---ttgtcttttcaaatt--taatttaggtacttgtca--catggaatt-ttttgtgtagGTTTGATAAAGACCCTGCGAGCAATAAATGGCACCTCTTGGCATGACACTTTTTTAGGCCTTTGGTTAGCAACTCTTCGTCTTGTTCAGAGG
      |  | ||   ||       | |   ||||||| ||  ||   | |  | | ||||    ||| |    || |    |  ||||   || ||||||  |||||||||||||   || | |||||| ||||||||| | ||||||||||| ||||| || |||||| | ||| |||||||||||||||| |||
-----gtaaataagtttttgtcctgtatccttgaaatatttttttcactggaatatacaaaacagtaactatcataatgtaaatccatgtttttattttgtacagGTTTGATAAAGGTTCTTCAAGCAATTAATGGCACCACCTGGCATGACACCTTTTTGGGTCTTTGGATTGCAGCTCTTCGTCTTGTTCAAAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgtcttttcaaatttaatttaggtacttgtcacatggaattttttgtgtagGTTTGATAAAGACCCTGCGAGCAATAAATGGCACCTCTTGGCATGACACTTTTTTAGGCCTTTGGTTAGCAACTCTTCGTCTTGTTCAGAGG
               atttaat  putative branch site (score: 4)
                                           ttttttgt  putative PPT
        ttttcaaatttaattt  TA-rich tract