Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

atatccttttcaaaattcagtttactaggattccaactattcattcatctgggtggttatttctattattatgtttatcagtttatgtctagtgtctgcttccaaccttgacattttaaacAAAGTAGATAAAGGTGCACATGCTTATTGGTTAGAGAAGGGGATAGTCGAATCTCGTCCTGATCACATTCTGAATCTTATACACTATGAGGTCAGAATTT

Basic information

species Glycine max
transcript GLYMA15G10460.4
intron # 4
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10460.4 (Glycine max), 3'ss of exon 4
lower sequence: AT2G39080.1 (Arabidopsis thaliana), 3'ss of exon 5
atatccttttcaaaattcagtttactaggattccaactattcattcatctgggtggttatttctattattatgtttatcagtttatgtctagtgtctgcttccaaccttgacattttaaacAAAGTAGATAAAGGTGCACATGCTTATTGGTTAGAGAAGGGGATAGTCGAATCTCGTCCTGATCACATTCTGAATCTTATACACTATGAGGTCAGAATTT
||||||||||   | |||  |  |||   | |   | |   ||   || ||   |  | ||| | ||  | |||  |  | |||  |  |  ||| |        |||  || ||||| ||| || |  || |||||||||| |||| |||||    |||| || | | ||  ||||||||||||| ||||| ||||| ||||||||||||          
atatcctttt-ggatttcgat--actgaaact--gaatgagcaagtat-tgaaagact-tttttcttggtctgtagaaga-tttgagcattatgtttct------cctgaactttttatacACAGAAACTAGAGGTGCACATACTTACTGGTTGAGTAAGGAGACAATTGATGCTCGTCCTGATCATATTCTAAATCTCATACACTATGAG----------

upper sequence: GLYMA15G10460.4 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0020g01880.t01 (Vitis vinifera), 3'ss of exon 5
atatccttttcaaaattcagtttactaggattccaactattcattcatctgggtggttatttctattattatgtttatcagtttatgtctagtgtctgcttccaaccttgacattttaaacAAAGTAGATAAAGGTGCACATGCTTATTGGTTAGAGAAGGGGATAGTCGAATCTCGTCCTGATCACATTCTGAATCTTATACACTATGAGGTCAGAATTT
                     ||   ||  || || ||||  |||  |  | | |   |||||    |||   |  |  |  | | || |  | | |  |   |||||| ||  ||   |||||| ||||| ||||||||||| |||||||||  |||| ||||  || ||| | || ||||||||||| || ||||||||||||||||||          
--------------------gttgtgagatttacatctat--atttgtaagagag---atttcagggatt-catggaggaaatca-gtatcatat-tcttagtaaccttaactattggcacaaagcagatagAGGTGCACATGTTTATTGGTTGAAGAAAGGGACTGTTGAAGCCCGCCCTGATCACATCCTCAATCTTATACACTATGAG----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258484|gb|BE346631.1|BE346631
EST:     AAATAGTGCTGGAGTTTGGTGGNTCTGTTTTAAGACTGTCTGGACTNTAT                         AAAGTAGATAAAG
genomic: AAATAGTGCTGGAGTTTGGTGGTTCTGTTTTAAGACTGTCTGGACTTTATatatcctttt ... cattttaaacAAAGTAGATAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattatgtttatcagtttatgtctagtgtctgcttccaaccttgacattttaaacAAAGTAGATAAAGGTGCACATGCTTATTGGTTAGAGAAGGGGATAGTCGAATCTCGTCCTGATCACATTCTGAATCTTATACACTATGAGGTCAGAATTT
 aaccttgac  putative branch site 
                                            acattttaaa  TA-rich tract