1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aactagtctggtatccaatcaaatacataacaattttgtacacctcagagctatcacttgttattgtcttaccaattttgttttgtaattctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGATAGAACTCATCCGGAATGGAAAAGTAGAAGAAGCGCTAGAGTTTGCCC
species | Glycine max |
transcript | GLYMA15G07570.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGGTAACGTTGAAGATGCAATTGAAAAAGTGAATGACTTAAATCCAGAG ATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAATGATTGEST: gi|193719536|gb|FK650872.1|FK650872
genomic: GTGGTAACGTTGAAGATGCAATTGAAAAAGTGAATGACTTAAATCCAGAGgtaggcttct ... ctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTG
EST: GTGGTAACGTTGAAGATGCAATTGAAAAAGTGAATGACTTAAATCCAGAG ATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGEST: gi|38193470|gb|CF922676.1|CF922676
genomic: GTGGTAACGTTGAAGATGCAATTGAAAAAGTGAATGACTTAAATCCAGAGgtaggcttct ... ctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTG
EST: ACGTTGAAGATGCAATTGAAAAAGTGAATGACTTAAATCCAGAG ATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGEST: gi|208037374|gb|GD835303.1|GD835303
genomic: ACGTTGAAGATGCAATTGAAAAAGTGAATGACTTAAATCCAGAGgtaggcttct ... ctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTG
EST: GATGCAATTGAAAAAGTGAATGACTTAAATCCGGAG ATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGEST: gi|15812571|gb|BI784846.1|BI784846
genomic: GATGCAATTGAAAAAGTGAATGACTTAAATCCAGAGgtaggcttct ... ctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTG
EST: GTGGTAACGTTGAAGATGCAATTGAAAAAGTGAATGACTTAAATCCAGAG ATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGEST: gi|192328969|gb|FK021072.1|FK021072
genomic: GTGGTAACGTTGAAGATGCAATTGAAAAAGTGAATGACTTAAATCCAGAGgtaggcttct ... ctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTG
EST: GTGGTAACGTTGAAGATGCAATTGAAAAAGTGAATGACTTAAATCCAGAG ATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGEST: gi|208317059|gb|GE111500.1|GE111500
genomic: GTGGTAACGTTGAAGATGCAATTGAAAAAGTGAATGACTTAAATCCAGAGgtaggcttct ... ctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTG
EST: AATTGAAAAAGTGAATGACTTAAATCCGGAG ATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGEST: gi|22928038|gb|BU545177.1|BU545177
genomic: AATTGAAAAAGTGAATGACTTAAATCCAGAGgtaggcttct ... ctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTG
EST: TTGAAAAAGTGAATGACTTAAATCCAGAG ATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGEST: gi|151408269|gb|EV278077.1|EV278077
genomic: TTGAAAAAGTGAATGACTTAAATCCAGAGgtaggcttct ... ctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTG
EST: GTGGTAACGTTGAAGATGCAATTGAAAAAGTGAATGACTTAAATCCAGAG ATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGEST: gi|9819896|gb|BE555339.1|BE555339
genomic: GTGGTAACGTTGAAGATGCAATTGAAAAAGTGAATGACTTAAATCCAGAGgtaggcttct ... ctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTG
EST: GTGGTAACGTTGAAGATGCAATTGAAAAAGTGAATGACTTAAATCCAGAG ATACTGGACACGNATCCCCCATTATTTGTCCATCTTCAACAGCAACGATTG
genomic: GTGGTAACGTTGAAGATGCAATTGAAAAAGTGAATGACTTAAATCCAGAGgtaggcttct ... ctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTG
cagagctatcacttgttattgtcttaccaattttgttttgtaattctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGATAGAACTCATCCGGAATGGAAAAGTAGAAGAAGCGCTAGAGTTTGCCC
gtcttac putative branch site (score: 3)
ttctgtct putative PPT
aattttgttttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactagtctggtatccaatcaaatacataacaattttgtacacctcagagctatcacttgttattgtcttaccaattttgttttgtaattctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGATAGAACTCATCCGGAATGGAAAAGTAGAAGAAGCGCTAGAGTTTGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC