Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtttcttcatcattgtttctctctctcccatcccatgtctcccctcctcttcactttgttgattctggctcatccaactgagacaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAACTTGAAGAAGCTGGATTTTCACATGACAGATTCTACATCCATTGTGATGG

Basic information

species Glycine max
transcript GLYMA15G05630.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17022958|gb|BM093992.1|BM093992
EST:     CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC
genomic: CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC
EST: gi|27423770|gb|CA935290.1|CA935290
EST:     TTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC
genomic: TTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC
EST: gi|14989994|gb|BI315667.1|BI315667
EST:     CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC
genomic: CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC
EST: gi|26058766|gb|CA801680.1|CA801680
EST:     CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC
genomic: CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC
EST: gi|6666379|gb|AW277838.1|AW277838
EST:     CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC
genomic: CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC
EST: gi|24206063|gb|BU965316.1|BU965316
EST:     CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC
genomic: CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC
EST: gi|19348938|gb|BM893470.1|BM893470
EST:     CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATA
genomic: CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATA
EST: gi|6666146|gb|AW277605.1|AW277605
EST:     CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC
genomic: CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC
EST: gi|298173832|gb|HO017168.1|HO017168
EST:     AAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC
genomic: AAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC
EST: gi|193382750|gb|FK347669.1|FK347669
EST:     CTTCTTAGTCA-CAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATTAAAGAAA
genomic: CTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCA-TAAAGAAA
EST: gi|7146009|gb|AW507931.1|AW507931
EST:     AAGCTTCTTAGTCACCCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC
genomic: AAGCTTCTTAGTCA-CCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcccctcctcttcactttgttgattctggctcatccaactgagacaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAACTTGAAGAAGCTGGATTTTCACATGACAGATTCTACATCCATTGTGATGG
                   tgttgat  putative branch site (score: 4)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcaagtttcttcatcattgtttctctctctcccatcccatgtctcccctcctcttcactttgttgattctggctcatccaactgagacaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAGAAACTTGAAGAAGCTGGATTTTCACATGACAGATTCTACATCCATTGTGATGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA