Sequence
atgc intronic sequence ATGC exonic sequence...tcaagtatttggatgttgaacttcaggcatttatttctagtttagaaatagtatttaatttttcaacaaagcctgagaattctaaaattctatgatgtagGCGAATGATATAGCTCATTTTCATGCTAATACACATATCCCAGTGATTGTTGGATCTCAAATGCGGTATGAAGTCACTGGTGATCCACTTTATAAG
Basic information
species | Glycine max |
transcript | GLYMA15G03770.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G03770.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0004g01650.t01 (Vitis vinifera), 3'ss of exon 4
-tca-agtatttggatgttgaacttcaggcatttatttctagtttagaaatagtatttaatttttcaacaaagcctgagaattctaaaattctatgat-gtagGCGAATGATATAGCTCATTTTCATGCTAATACACATATCCCAGTGATTGTTGGATCTCAAATGCGGTATGAAGTCACTGGTGATCCACTTTATAAG
||| ||||| | || || | | | ||| || | |||||| | || || | | | | | | | ||| | || | |||||| |||| ||| || |||||||| ||||||||||||||| | |||||||| ||||||||||||||||| |||||||||||||||||||||||
atcatagtatattcatattttatatgttgtttttcttgttggtttag---ctgccttcaactgaaacattacttcgcaaagcgttcctattttctgcttgtagGCTGATGACATATCTGGATTTCATGCCAATACACATATCCCAATTGTTGTTGGAGCTCAAATGCGGTATGAAATCACTGGTGATCCACTTTATAAG
upper sequence: GLYMA15G03770.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0004g01770.t01 (Vitis vinifera), 3'ss of exon 4
tcaagtatttggatgttga-acttcaggcatttatttctagtttagaaatagtatttaatttttcaacaaagcctgagaattctaaaattctatgatgtagGCGAATGATATAGCTCATTTTCATGCTAATACACATATCCCAGTGATTGTTGGATCTCAAATGCGGTATGAAGTCACTGGTGATCCACTTTATAAG
|| | | || | | | || | |||| || | ||| | || |||| | | | | ||| | ||| | ||||||| || ||| || ||||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||| |||
-atggtcatagtatatccacatttgatatattttttcttgtttttttagcttccttccatttcagcattacatcacaaaatatttttatttttgcttgtagGCTGATAGCATATCTGGTTTTCATGCCAATACACATATCCCAGTTGTTATTGGATCCCAAATGCGGTATGAAGTCACTGGTGATCCACTTTACAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatagtatttaatttttcaacaaagcctgagaattctaaaattctatgatgtagGCGAATGATATAGCTCATTTTCATGCTAATACACATATCCCAGTGATTGTTGGATCTCAAATGCGGTATGAAGTCACTGGTGATCCACTTTATAAG
ttctaaa putative branch site (score: 2)
tatttaatttttcaac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcaagtatttggatgttgaacttcaggcatttatttctagtttagaaatagtatttaatttttcaacaaagcctgagaattctaaaattctatgatgtagGCGAATGATATAGCTCATTTTCATGCTAATACACATATCCCAGTGATTGTTGGATCTCAAATGCGGTATGAAGTCACTGGTGATCCACTTTATAAG
- - - - - -gatgttg
- - - - - - - - - - - tcaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcctga