1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agttgaaagaatcttataattagagacggaaggagtaatagctaattttcatttctgaatacagtttaaattgtgtttttatctacttgtttcccttcagGTCTTGCTCGGAAGGAGGATTTCCCATTTATTACTTATTACTGCCCACATTGTCACGCCCTGAACAAACCAAAGCAATCGGATGAGCGTACATCTGGTTT
species | Glycine max |
transcript | GLYMA14G17080.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCAACACAGTCTTATGCGCTCGTATGCGGTAACTGCCGCATGCATAATG GTCTTGCTCGGAAGGAGGATTTCCCATTTATTACTTATTACTGCCCACATTEST: gi|151410812|gb|EV280627.1|EV280627
genomic: TCCAACACAGTCTTATGCGCTCGTATGCGGTAACTGCCGCATGCATAATGgtaagttggc ... ttcccttcagGTCTTGCTCGGAAGGAGGATTTCCCATTTATTACTTATTACTGCCCACATT
EST: TCCAACACAGTCTTATGCGCTCGTATGCGGTAACTGCCGCATGCATAATG GTCTTGCTCGGAAGGAGGATTTCCCATTTATTACTTATTACTGCCCACATT
genomic: TCCAACACAGTCTTATGCGCTCGTATGCGGTAACTGCCGCATGCATAATGgtaagttggc ... ttcccttcagGTCTTGCTCGGAAGGAGGATTTCCCATTTATTACTTATTACTGCCCACATT
ttttcatttctgaatacagtttaaattgtgtttttatctacttgtttcccttcagGTCTTGCTCGGAAGGAGGATTTCCCATTTATTACTTATTACTGCCCACATTGTCACGCCCTGAACAAACCAAAGCAATCGGATGAGCGTACATCTGGTTT
tttttatctacttgtt CT-rich tract
tttaaattgtgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttgaaagaatcttataattagagacggaaggagtaatagctaattttcatttctgaatacagtttaaattgtgtttttatctacttgtttcccttcagGTCTTGCTCGGAAGGAGGATTTCCCATTTATTACTTATTACTGCCCACATTGTCACGCCCTGAACAAACCAAAGCAATCGGATGAGCGTACATCTGGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacttg