1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatcattcagcttgatttccattcataaattaaattcattgaagcctttcagctgtagagttattgtatttatcgattgcttagttttgtaccttggtattaatgttaacattttctgacatggtgtaccatccaaattatttgttatcatcagAGATGCTTAATCTTACTACTCGTCTATGCTGGAAGTTATTGAAAAAAGATGGGTATGTCGCAATATGGCAGAAACCTTCTGAAAATAGCTGCTATCTAAA
species | Glycine max |
transcript | GLYMA14G07190.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCCCAACCGGTTTATAAACATGAGGAAGTTTTAGAAGAACAATGGAAAG AGATGCTTAATCTTACTACTCGTCTATGCTGGAAGTTATTGAAAAAAGATGEST: gi|27446192|gb|CA953315.1|CA953315
genomic: TGCCCAACCGGTTTATAAACATGAGGAAGTTTTAGAAGAACAATGGAAAGgtatcattca ... ttatcatcagAGATGCTTAATCTTACTACTCGTCTATGCTGGAAGTTATTGAAAAAAGATG
EST: TGCCCAACCGGTTTATAAACATGAGGAAGTTTTAGAAGAACAATGGAAAG AGATGCTTAATCTTACTACTCGTCTATGCTGGAAGTTATTGAAAAAAGATGEST: gi|14126212|gb|BG790650.1|BG790650
genomic: TGCCCAACCGGTTTATAAACATGAGGAAGTTTTAGAAGAACAATGGAAAGgtatcattca ... ttatcatcagAGATGCTTAATCTTACTACTCGTCTATGCTGGAAGTTATTGAAAAAAGATG
EST: TGCCCAACCGGTTTATAAACATGAGGAAGTTTTAGAAGAACAATGGAAAG AGATGCTTAATCTTACTACTCGTCTATGCTGGAAGTTATTG
genomic: TGCCCAACCGGTTTATAAACATGAGGAAGTTTTAGAAGAACAATGGAAAGgtatcattca ... ttatcatcagAGATGCTTAATCTTACTACTCGTCTATGCTGGAAGTTATTG
ttaatgttaacattttctgacatggtgtaccatccaaattatttgttatcatcagAGATGCTTAATCTTACTACTCGTCTATGCTGGAAGTTATTGAAAAAAGATGGGTATGTCGCAATATGGCAGAAACCTTCTGAAAATAGCTGCTATCTAAA
ttctgac putative branch site (score: 2)
aaattatttgttatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcattcagcttgatttccattcataaattaaattcattgaagcctttcagctgtagagttattgtatttatcgattgcttagttttgtaccttggtattaatgttaacattttctgacatggtgtaccatccaaattatttgttatcatcagAGATGCTTAATCTTACTACTCGTCTATGCTGGAAGTTATTGAAAAAAGATGGGTATGTCGCAATATGGCAGAAACCTTCTGAAAATAGCTGCTATCTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT